Solanum stenotomum: 125874053
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Entry
125874053 CDS
T08385
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
sstn
Solanum stenotomum
Pathway
sstn04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
125874053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125874053
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
125874053
BRITE hierarchy
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Paralog
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
LRR_6
LRR_NXF1-5
F-box
LRR_8
Motif
Other DBs
NCBI-GeneID:
125874053
NCBI-ProteinID:
XP_049410816
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Position
8:complement(60067561..60102653)
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AA seq
605 aa
AA seq
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MSTLAPHFRTVMVNSLPLEVLEHIFSDITSDKDRNSISLVCKSWYEAERCCRKSVFIGNC
YAVSPSILIRRFPDLRSVTIKGKPHFADFDLVPEGWGAYFYPWAVSMAKAYPFLEEIRLK
RMVVCDESLELISKSFKNFRVLVLQSCEGFTTDGLAAIAANCRNLRELDLGESEVEDLSG
HWLSHFPDSCTSLVSLNIACLASEVSFSALERLVARSPHLRTLRLNRAVSIEKLPKLLRH
ASKLVEFGTGSYSADMQADVSEVFVNVSQAFSGCNQLKGLSGFWDAVPAYFPTIYPVHSK
LTSLNLSYATIQIPDLGKLIGNCLNLQRLWVLDYIEDSGLEEIANTCKELQELRVFPSDP
FAPGPNVSLTEQGLVAVSMGCPKLQSVLYFCRQMTNDALVTIARNRPNMIRFRLCIIEPR
TPDYLTLEPLDAGFGAIVQHCKELRRLSLSGLLTDRVFEYIGVHAKKLEMLSLAFAGDSD
LGLHYVLSGCESLRKLEIRDCPFGDEALLANAEKLETMRSLWMSNCSVSFEACKLLAQKL
PGLNVEVIDERGHPDTRPESCPVEKLYIYRTVSGRRFDTPGFVWIIDEDAALTPYSKGNC
SLASS
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactttagcaccccattttcgtacagtaatggtgaactcacttcccttagaagtt
cttgaacacatcttctccgacataacttcagataaggacaggaactcaatatccttggtt
tgtaaatcttggtatgaagctgagaggtgttgtaggaaaagtgtgtttattgggaactgt
tatgctgttagcccttcaatcttgattagacgtttcccagacctcagatctgtaacgatt
aaagggaagccacattttgctgatttcgatcttgtacctgaaggttggggtgcatatttc
tatccatgggctgtttcaatggcgaaagcttatccatttcttgaggaaattaggcttaag
agaatggttgtttgtgatgagtcattggagctgatttcgaagtcgtttaagaatttcaga
gtcttggttttacagtcttgtgaaggatttactaccgatggacttgctgccattgctgct
aactgcaggaacctgagagaactggacctgggagaaagtgaagtagaagacctgagtggc
cactggcttagtcattttcctgatagctgcacatcgcttgtgtcacttaacattgcttgt
ttggcttctgaggtcagcttctcagctttggagcgtctagttgctcgctctcctcatttg
aggactcttcggctcaatcgtgccgtttccattgagaaacttccaaagctacttcgtcat
gcttcgaagttggttgaatttggtacaggatcctactctgctgacatgcaggctgatgtt
tctgaagttttcgtaaatgtatctcaagctttttcaggctgtaatcaactcaaaggcttg
agtgggttttgggatgctgtgccagcctactttccaactatttatccagtccactccaaa
ctcacctctttgaatttaagctatgctaccattcaaatacctgatcttggcaagctcatt
ggcaactgtctcaatttgcagcggttgtgggtgctagattacattgaagatagcggtctt
gaggagattgccaacacttgtaaggaacttcaagagcttagggtgtttccttctgatcca
tttgctccaggacctaatgtatccttgacagagcaaggccttgtagctgtctcaatgggc
tgccctaagcttcagtcagttttatacttctgccgccaaatgacaaatgacgccttagtt
actattgcaaggaatcgtcctaacatgatccgatttcgtttgtgtattatcgagcctcga
actcctgattacttaacccttgaaccacttgatgctggttttggggccattgtgcaacac
tgcaaggaattgcgacgactttctctttctggccttcttacagatcgtgtgtttgagtac
atcggggtccatgctaagaagttagagatgctttccttagcttttgcgggggatagcgat
ctaggcctccactatgttctctctggttgtgagagccttcgtaagttggagattagagac
tgcccctttggcgatgaggctctgttggctaatgctgaaaagctggagacaatgcgatcc
ctttggatgtctaattgttcagtaagttttgaagcatgtaagctgctagcccagaagttg
ccagggcttaatgttgaagttatagacgagaggggtcatccggatacgagaccagaaagc
tgccctgttgagaaactttatatatacaggacagtgtcaggaaggaggttcgacactcct
ggttttgtttggattattgatgaagatgcagcattgactccatatagcaaggggaattgc
tctctggcttcttcttag
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