Solanum stenotomum: 125874092
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Entry
125874092 CDS
T08385
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sstn
Solanum stenotomum
Pathway
sstn04120
Ubiquitin mediated proteolysis
sstn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125874092
04120 Ubiquitin mediated proteolysis
125874092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125874092
Enzymes [BR:
sstn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125874092
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125874092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
zf-RING_5
zf-RING_16
FlxA
zf_RING_Vps8
Prok-RING_4
PHD_NSD
zf-RING_Vps41
zf-C3HC4_4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
125874092
NCBI-ProteinID:
XP_049410859
LinkDB
All DBs
Position
8:complement(5720645..5728200)
Genome browser
AA seq
536 aa
AA seq
DB search
MMSVRTYAGLSVIASLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLAIMCILWQL
TKKIFLGTLREAEVERLNEQSWRELMEILFAITIFRQDFSMTFITMVTALFLVKTLHWLA
QKRVEYIETTPAVTKLSHIRIVSFMGFLLLIDSLLLYNYMNHLIQTRQASGSLFFAFEYM
ILATTTVATFVKYVFYVRDMLMEGQWERKAVYTFYLELIRDLIHLTMYMCFFLMIFINYG
VPLHLVRELYETFRNFKTRVADYIRYRKITSNMNDRFPDATLAELNGGDTICIICREEMT
TAKKLTCGHLFHVNCLRSWLERQNTCPTCRALVVPPENGTSVAGSGYAQQGTSLSSTSRG
SQADPRTNGYVSQHQARLQAAVAAAAIYEKSFVYPSAPTLSRSHGYALFPPSYGPVSSVS
VDSERESAANEWPQQHQYANMPFAYYPQTSFAPLGYPGANMPFGDSSWSNLSTSDTHLEA
HRIFLQQQCEALQNQLKLLQSSKTQKAADGAKVSESKGKAISLENAQNGQAAGADI
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgtacggacttatgctgggcttagtgtaatagcttctctagctgtcatttat
cacgcctttaatagtagaggccagttttacccagcaatggtttatttatcgacatctaag
atcagtctggtgcttctcctcaacatgggtcttgccattatgtgcattttgtggcagcta
accaagaaaattttccttggtacccttcgagaggcagaggtggagaggttaaatgagcag
tcatggcgggaactcatggaaatactttttgcaatcactattttccggcaagacttctcc
atgacgtttattaccatggttaccgcactatttttagtcaagactttgcattggttggcc
cagaaacgggttgagtacattgaaacaactccagctgttactaagttgtcccacattcgc
atagtttctttcatgggcttcctccttctcatagatagtctccttttgtacaactacatg
aaccatttgatacagacaagacaggcttctggttctctcttcttcgcgtttgagtacatg
atacttgctacaacaactgttgcaacatttgtaaaatatgtattctatgtacgtgacatg
cttatggaaggacaatgggagaggaaggccgtatatactttctacttggaacttattcgg
gacttgatccacttgactatgtacatgtgcttcttcctcatgattttcatcaattatggt
gtgcctctgcatttggttcgggagctttatgagacattccgcaacttcaagactcgagtt
gctgattacatacgatatcgaaaaatcacttcaaatatgaatgatcgttttccagatgct
acactggcagagctcaatggaggtgacactatctgcatcatttgtcgtgaggagatgacc
actgccaagaaacttacttgtggacatctctttcatgtcaattgcctccggtcatggcta
gaacgtcagaacacgtgtcctacttgcagagctcttgttgtaccacctgaaaatgggacg
agtgttgctggatctggatatgctcagcaaggaacaagtttatcaagcacatctcgaggt
tcccaagcagatcctaggacaaacggttatgttagtcagcaccaggctagactccaagct
gcagttgctgctgctgcaatttatgagaagtcctttgtttatccttctgcaccaacacta
agccggtctcatggatatgctctatttcctccgtcctacggaccagtcagttctgtcagt
gtggactcagaaagagagagtgctgcaaatgaatggccacagcaacatcaatatgcaaat
atgccttttgcttactatccacagaccagttttgctcctttaggatatcctggtgctaac
atgccttttggagatagttcctggagtaaccttagtacttcagatactcatctcgaggcc
cataggatattcttacagcagcagtgtgaggctctgcaaaaccagctcaagcttctacag
agttcaaagacccagaaagcagcagatggtgcaaaagtttctgagagcaagggaaaagca
atttcattagagaatgctcaaaatggacaggctgcaggtgcagatatttaa
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