Solanum stenotomum: 125874351
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Entry
125874351 CDS
T08385
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
sstn
Solanum stenotomum
Pathway
sstn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125874351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125874351
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125874351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
DUF2465
Phage_Mu_Gam
Motif
Other DBs
NCBI-GeneID:
125874351
NCBI-ProteinID:
XP_049411184
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All DBs
Position
8:8089343..8097444
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AA seq
943 aa
AA seq
DB search
MDEKFEEQGKLPELKLDARQAQGFLSFFKTLPKDVRAVRLFDRRDYYTAHGDDATFIAKT
YYHTTTALRQLGSGVGALSSVSVSRNMFETIARDILLERMDRTLELYEGSGSNWKLVKSG
TPGNFGSFEDILFANNEMQDSPAIVALAPKFDQNGCTVGLGYVDVTKRVLGLAEFLDDSH
FTNLESALVALGCRECLVPTETGKSSESRPLYDAISRCGVMVTERKKTEFKGRDLVQDLG
RLVKGSVEPVRDLVSSFECAAGALGCILSYAELLADESNYGNFTVKQYNLNSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAF
VEDAALRQDLRQHLKRISDIERLTHNLERKRASLLHVVKLYQSGIRIPYIKSVLERYDGQ
FAPLIRERYIDSLEKWSDDNHLNKFIALVETAVDLDQLANGEYMISSAYDSNLSALKDEQ
ETLEQQIHNLHKQTANDLDLPIDKSLKLDKGTQFGHVFRITKKEEPKVRRQLNSHYIVLE
TRKDGVKFTNTKLKKLGDRYQKILDEYKSCQKELVARVVQTVASFSEVFEGLAGSLSELD
VLLSFADLASSCPTAYSRPNISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTYIRQVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLKGVS
TFMQEMLETASILKGATNRSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATH
FHELTALANENGNNGHKQIGGVANFHVSAHIDSSSRKLTMLYKVQPGACDQSFGIHVAEF
ANFPQSVVALAREKASELEDFSPNAMMPTDSKEAVSKRKREFDPHDVSRGTARARQFLQD
FTQLPLDKMDLKQALQQLSQMKTDLEKNAVDSQWLQQFFSSSD
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaaatttgaggaacagggcaagcttcccgagcttaaacttgatgcgaggcaa
gctcaagggtttctttcattcttcaaaaccctacccaaggatgttagggcagttcgtctc
ttcgatcgtcgggactattatactgcccatggagatgatgcaactttcattgcaaagaca
tattaccataccacaactgctttacggcagttgggtagtggagttggtgctctttccagt
gttagtgtgagtagaaacatgtttgaaacaatagctcgtgatattctcttggagaggatg
gatcgtactcttgaattgtatgagggcagtggttcaaactggaaactggtcaaaagtgga
accccaggaaattttggaagttttgaggatattctgtttgctaataatgaaatgcaagat
tctccagcgattgttgctcttgcgccaaaatttgatcagaatggatgtacagttgggtta
ggctatgttgatgttactaagagagtccttggtttagcagaatttctagatgatagccac
ttcaccaatttggagtctgctttggttgctcttggttgcagagaatgtcttgtaccaaca
gagactgggaaatccagtgagagcaggcctctatatgatgcaatatcgagatgcggggtg
atggtaactgaaagaaagaaaactgaatttaaaggtagggatttggtacaggatcttggt
aggcttgtcaagggttcagtagaacctgttcgagatctagtctctagttttgaatgtgca
gcaggtgctttggggtgcatactttcctatgcagaactacttgcggatgagagcaattat
ggaaacttcacagtcaaacaatacaacctcaatagttacatgagattagattctgctgct
atgagagcactgaatgttatggagagcaaatcagatgctaataaaaattttagcttgttt
ggtctcatgaatagaacctgtactgctggaatgggtaaaaggttattgcacatgtggctg
aaacagccgttactagatgtagatgagattaactgtagactggatttagttcaagcattt
gtggaggatgctgcacttcgccaagatttgaggcagcatctgaaaagaatttcagatatt
gagcggctgacacacaatcttgagaggaaaagagccagtttactgcacgttgtaaaactc
tatcagtctggcatcagaataccatatatcaaaagtgttttggaacgttatgatgggcaa
tttgcaccactaatcagggaaaggtatattgattctcttgagaaatggagtgatgataat
catctgaataagttcattgctcttgtggaaactgctgttgaccttgatcaacttgcgaat
ggagaatacatgatttcttctgcatatgactcaaatttatctgctctgaaggatgagcaa
gagacattggagcaacagattcataatttgcacaaacaaactgccaatgatcttgatcta
cctattgataagtctcttaaattagataaaggaacacaatttggacatgtcttcagaatt
accaagaaagaagaaccaaaagtcaggagacagctaaattctcactacattgttcttgaa
acacgtaaggatggggtaaagttcaccaatacaaaactcaaaaaactaggagatcggtac
cagaagatcttagatgagtataagagctgtcagaaagaactggtagctcgggtagttcaa
acagttgcgagtttctccgaggtgtttgaaggtttagctggttcactttctgagttggat
gtgctactgagttttgcggatttggcttccagttgcccaactgcctactcaagaccaaat
atcagtccaccagatacgggagatattatacttgaagggtgtagacatccttgtgtggaa
gctcaagactgggtcaacttcatccctaatgactgtagactagttaggggagaaagttgg
tttcagattatcacaggccccaacatgggtggaaagtctacctacattcgtcaggttggt
gtgaatgtcctgatggcccaagttggctcatttgttccatgtgacaatgctaccatttct
attcgtgattgcatttttgctcgtgttggcgctggagattgccagctgaagggggtttct
acttttatgcaagagatgcttgagactgcatcaatcttgaaaggagctactaatagatca
ttgattataattgatgagttgggccgtgggacgtcgacttatgatggctttggtttagct
tgggctatttgtgagcacattgttgaagaaattaaagcaccaacattgtttgcaactcac
tttcatgagctgactgcattggccaatgagaatggaaacaatggacataagcaaattggc
ggtgtggcaaattttcatgtcagtgcacacattgactcttctagtcgcaagctaactatg
ctttacaaggttcaacccggtgcttgtgatcaaagttttggtattcacgttgcagagttt
gccaattttccacaaagtgttgtggccctggccagagaaaaggcttctgagttggaggat
ttctctcctaatgctatgatgccaactgacagtaaagaggcagtctcaaagcggaagagg
gaatttgacccacatgatgtgtctagaggtactgcccgagctcgtcaattcttacaggat
ttcactcagttgcctctggataagatggatctaaagcaggccttgcaacagttgagccaa
atgaagaccgaccttgagaagaatgcagttgacagtcagtggcttcagcagttctttagt
tcttcagattag
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