Solanum stenotomum: 125874710
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Entry
125874710 CDS
T08385
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125874710
09123 Folding, sorting and degradation
03018 RNA degradation
125874710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125874710
03041 Spliceosome [BR:
sstn03041
]
125874710
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125874710
mRNA degradation factors
5'-3' decay
Lsm complex
125874710
Spliceosome [BR:
sstn03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125874710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
125874710
NCBI-ProteinID:
XP_049411669
LinkDB
All DBs
Position
8:5031973..5035030
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AA seq
98 aa
AA seq
DB search
MATGLGLESLVDQTISVITNDGRNIVGVLRGFDQATNLILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEDLDSNLDMSKLRAHPLKPVVH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcaactggacttgggcttgagtctcttgttgatcaaactatctcagttattacaaat
gatggacggaatattgtgggagttctgagaggattcgaccaggctacaaacttgattctt
gatgaatctcatgagagagtatattcaacaaaggaaggtgtacagcaacttgtgttaggt
ctttatatcataaggggggacaacataagcgtcgttggggaattagatgaagatctggat
agtaacttggatatgtcaaaactgagagcacatcctctaaagccagtcgttcactga
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