Solanum stenotomum: 125874789
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Entry
125874789 CDS
T08385
Name
(RefSeq) nuclear poly(A) polymerase 4-like isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125874789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125874789
Enzymes [BR:
sstn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
125874789
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
125874789
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
125874789
NCBI-ProteinID:
XP_049411775
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All DBs
Position
8:9491471..9497396
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AA seq
740 aa
AA seq
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MGVSNCSITLPPTQQVPLPKEYGVTKPLSLAGPMEADIQRTKELEKFLVGAGLYESAEEA
AKREGVLCQLKQIVKDWVKDLTRLRGYNDQMVEDANAVILTFGSYRLGVHGPGADIDTLC
VGPSYVNREDDFFFVLHNILMEREEVTELQPVPDAHVPVMKFKFDGISIDLLYASISLLV
VPDDLDISSESVLCNVDEPTVRSLNGCRVADKILKDVPNIEFFRITLRCLKFWAKQRGVY
SNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCQIEDKEFGF
SIWDPRKNPWDRTHQMPIITPAYPCMNSSYNVSASTLRVMTEQFEFGNNICQEIDLNKAR
WTALFEQYPFFENYKNYLQVDIVAADDDDLLVWRGWVESRLRQLTLMIERDTFGKLQCHP
YPHEYVDPSKQCAHRAFFMGLQRRPGELVQEGQQFDIRGTVDEFRHQVNMYMYWKPGMEM
FVSHVRRKQIPSYVLSDGYKQNQTPRLMSGQLGEKPVSGIFRSRSGERGGLERKRELEGV
EESQQSLDKRPSISPPRRESPSPELIVGQKSGMLLQQRFSTVSGGKRKSEEISNNVTNDK
MQFAIPDKDVYSEQRKSRRAQCAEADGCVYQSSGVTSLVEAGTSGDPAHELLRLCHDGYA
AGSTGCNSLRSSQDDLYRAESKSLLNNVCENGSRFFEDALRELEPKAARGVLTSPDSIGS
ESVQKSSTRHVSRLSVPSTA
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgggggtttccaattgttccattactttgccaccgacccagcaggttccactgcctaag
gagtatggggtaacgaaacccttgtctctagcaggacctatggaggctgatattcagcgt
accaaagagttggaaaagttcttggtcggtgctggactctatgaaagcgctgaggaggct
gctaagagagaaggagttctctgccagctaaagcagattgtgaaggactgggtgaaagat
cttactcgactgagagggtacaatgatcagatggttgaggatgcaaatgctgtcatttta
acttttggttcttatcgacttggggtgcatggtcctggagctgacatagataccttatgt
gttggaccatcctatgtgaaccgagaggatgacttcttttttgtattgcataatattttg
atggagagggaagaagttactgaactacaaccagtcccagatgcacatgtccctgttatg
aagtttaagtttgatgggatctcaattgatcttctttatgcaagcatttctcttttggtt
gtgccagatgacttggacatatccagtgaatccgtgttgtgcaatgttgatgagccaact
gtaaggagccttaatggctgcagggtagcagataaaatccttaaagatgttccaaatatt
gagtttttccggatcacacttcgatgtttaaagttttgggctaaacagcgtggtgtttat
tcaaatgtgactggatttcttggtggagttaactgggctcttctggttgctcgggtttgc
caactctatccaaatgctgttccgagtatgctggtttctcgttttttccgcgtatataca
caatggcgctggccaaatcctgtgatgctttgtcagatagaggataaagaatttggattt
tctatctgggatccacgtaaaaatccttgggaccggacacatcagatgccaattattaca
cctgcctatccttgcatgaactctagctacaatgtatctgcaagtactcttcgtgttatg
acagaacaatttgaatttggtaacaacatatgtcaggaaattgacctcaataaagcccga
tggactgcattgtttgagcagtatcctttcttcgaaaactacaagaactatttgcaagtt
gacatagttgcagctgatgatgatgacttacttgtgtggagaggctgggtcgaatcccgg
ttaaggcagcttactttgatgatagagcgggacacatttgggaaattgcagtgccatcct
tatccccacgagtatgtggacccgtccaaacagtgtgcccatcgtgccttcttcatgggt
ttgcagaggaggccaggggagttggttcaagaaggtcagcagtttgatatccgtgggaca
gttgatgagtttagacaccaagtaaacatgtatatgtattggaaaccaggaatggaaatg
tttgtgtcccatgttcgtagaaagcagattccctcttatgttctatcagatggttataaa
caaaaccaaacaccaaggctaatgagtgggcagctgggagagaagcctgtctctggtatt
tttaggtcaagatccggagaaagaggaggtttggaaaggaaaagagagcttgaaggtgtg
gaagagagtcagcagagtttggacaaacgaccatcaattagccctccaagaagggaatca
ccgtcgcctgaacttattgttggtcagaaaagtggcatgttgttacaacagcgtttctca
acagtttctggagggaagagaaagagtgaagaaatttcaaataatgtgacgaatgataag
atgcagtttgctattccggacaaagatgtttatagtgaacaaaggaagtcacgaagagca
caatgtgcggaagcagatggatgtgtataccagtctagtggtgtcacaagccttgtcgaa
gctggtacctctggagatcctgcacatgaattgctccgactctgccatgatggttatgca
gcgggcagtactggttgcaactctctccgttcctctcaggatgacttgtacagagcagag
tccaagtcactgttgaataatgtatgtgaaaatggttcgagattttttgaagatgcattg
cgggagttagagccaaaagctgctcgtggagtgttaacatctccggatagcattggatcg
gagtctgtacaaaaatcttctacaaggcatgtttcacggttaagtgttccatcaacagct
tga
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