Solanum stenotomum: 125874865
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Entry
125874865 CDS
T08385
Name
(RefSeq) E3 ubiquitin protein ligase RIN2
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
sstn
Solanum stenotomum
Pathway
sstn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125874865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125874865
Enzymes [BR:
sstn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
125874865
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125874865
Multi subunit type E3
ERAD complex
125874865
LMBR1L-GP78-UBAC2 complex
125874865
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_2
zf-RING_11
zf-C3HC4_3
zf-RING_5
zf-RING_16
zf-C3HC4_4
FAR1_N
RINGv
zf_RING_Vps8_fungal
PHD
U-box_ZFPL1
zf-RING_Vps41
Kazal_1
zf_RING_Vps8
zf-HC5HC2H
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
125874865
NCBI-ProteinID:
XP_049411859
LinkDB
All DBs
Position
8:complement(23420383..23442571)
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AA seq
450 aa
AA seq
DB search
MGVSYLSVSAFCTVLSYVGLQCWMGISVEKLKSDGLIGESIINFGNESRALENLLGSHTT
IALGANFAVNVFILLVLFLKTIFFGDLHSSEIRKLAERLINYVISKGTFLPLVVPPTLYQ
AGLWSTWLAVLCFLKMFQALARDRLERLNASPSATPWSYFRVYSALLLVLSANLLWMRAC
LIVYKTISSSLFLLLFFEPLSIAFETLQAILVHGFQLLDIYIHDSANDISNSRISKLFDI
SAAGSFGEWKGVLIRNMGFLLDMMTLLMALAHYVHIWWLHGMAFHLVDAILFLNIRALLS
AIVKRVKGFIKLRIALGTLHGALPDATLEELQTYDDECAICREPMAKAKKLSCNHLFHLA
CLRSWLDQGLTENYSCPTCRKPLFIGRSENEVNPQTVDVRGDELLAREMSMGLDQLNLPG
HALQNEASRNQMHNPLESSDWRSVFLYHSR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtaagctacttgtcagtttcagcattctgcactgttctgagctatgtcggactc
cagtgttggatgggaatttcggttgagaaactaaaatcagatgggctcattggggagagc
attatcaactttgggaatgaaagccgtgcactagagaaccttttaggttcacatacaaca
attgctctgggagccaattttgcagtcaacgtatttatactgctagttttgtttcttaag
actatattctttggagatttgcactcgtcagaaatccgaaagctggctgagcgtcttatc
aattatgttatttccaagggaacttttcttccgttggttgttccacctacgctgtatcaa
gcaggcctgtggtcaacgtggctagctgttctttgctttttaaagatgtttcaagcttta
gctagggatcgacttgaacgattgaatgcctctccttcagctactccctggtcatatttc
cgggtgtattctgccttattgctggttctctcagccaacttactctggatgagggcgtgc
ctgattgtatataaaacaataagttcatccctgtttttgttattgttctttgagcctctt
agcatagcatttgagacgctacaggctattcttgttcatggatttcagctgcttgacata
tatatccatgactcagcaaatgatatttcaaatagtagaatatccaagctctttgacata
tctgctgcaggctcatttggggaatggaaaggcgttcttattcggaatatgggttttctc
ctggacatgatgactctgttgatggccctcgctcattatgtgcacatttggtggcttcat
ggcatggcatttcaccttgtggatgcaattcttttcctaaatatccgtgctttattaagt
gccattgtaaaacgggtcaaagggtttattaaactaagaatagcattgggaactcttcat
ggtgcacttcctgatgcaactttggaagagctacaaacttatgatgatgaatgtgccatt
tgcagggaaccgatggcaaaggcgaaaaaactatcttgtaatcatcttttccatcttgca
tgcttgagatcttggttggatcaaggcttaactgaaaattattcatgtcccacttgccgg
aagccgttgtttataggaagaagcgagaatgaggtaaatcctcaaaccgtagatgttcgg
ggtgatgagctgcttgctcgtgagatgagtatgggacttgatcagttgaatcttcctggt
catgcacttcaaaatgaagcttcccgtaatcaaatgcacaatcctcttgaaagtagtgat
tggaggtctgttttcttgtatcatagtcggtga
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