Solanum stenotomum: 125875002
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Entry
125875002 CDS
T08385
Name
(RefSeq) eukaryotic translation initiation factor 3 subunit B
KO
K03253
translation initiation factor 3 subunit B
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125875002
03012 Translation factors [BR:
sstn03012
]
125875002
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
125875002
Translation factors [BR:
sstn03012
]
Eukaryotic type
Initiation factors
eIF-3
125875002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF2A
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_ELP1_1st
RRM_1
WD40_Prp19
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
125875002
NCBI-ProteinID:
XP_049412012
LinkDB
All DBs
Position
1:complement(19600210..19605629)
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AA seq
717 aa
AA seq
DB search
MSEVVSMEEIRAISDRLGVDLTQIDLDSIHLPPGDDLGIPSDDEDLLEEDALEEDQGFGN
ILVVDNLPVVPKEKYEKLEGVVRKIYSQLGVIKEGGLYMPVDPETQKTLGYCFIEYNTPQ
EAELSKEKTHGYKLDRSHIFAVNMFEDIEKFLKVPDEWAPPEIKPYVPGEMLLKWLTDEK
ARDQYVIRSGGDTEVLWNDARQMKPELVYKRPYWTESFVQWSPMGTYLATVHRQGAAIWG
GATTFNRLMRYAHPQVKLIDFSPGERYLVTYSSHEPSNPRDTHRVVLNIFDVRTGKVMRD
FKGSADEFAVGGTGGVTGVSWPVFRWSGGKEDKYFARIGKNVISVYETETFSLIDKKSIK
VENVMDFSWSPTDPILSLFVPECGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNG
DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI
HGDNPRPDVSFYSMRSGTNTGRVSKLTTLKGKQANALYWSPGGRFIILAGMKGFNGQLEF
FDVDELDTMASAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDH
FFQFLWRPRPPSFLSKEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQDREKRKKLKEEWE
AWINEWKQLHEEEKMEREKLRDGEASDEEEEYQAKEVEVEEILKVDEEVIPFEESQQ
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagtggtttctatggaagaaatcagagctatatctgataggcttggtgtggat
cttacacaaatcgatctggactctattcatcttccccctggtgatgatttggggataccc
agtgacgatgaagacttgttggaggaggacgccttggaggaggatcaaggttttggaaac
atactggtggtggacaatcttccagttgtgcctaaagagaaatatgagaaattggaagga
gtagttcggaaaatttacagccaacttggtgttattaaggagggtggtctctatatgcct
gttgatcctgagactcagaaaacacttgggtactgctttatagagtataatactcctcag
gaagctgagctgagtaaggagaagacacatggatacaagttagataggtcacatatattt
gctgttaacatgtttgaagacattgagaagttcctgaaagttccagatgagtgggctcca
ccagagatcaagccttatgttccaggggagatgctgctaaaatggcttactgatgagaaa
gctagagatcagtacgtgattcggtctggcggtgacacggaggtcctctggaatgatgca
agacaaatgaagcctgagcttgtttataaacgtccttattggactgagagttttgttcaa
tggtcccctatgggaacttacttggcaacagttcacagacaaggagctgcaatttggggt
ggtgccaccactttcaaccgcctcatgcgctatgcacatcctcaggtaaagctgattgat
ttctcccccggtgagagatatctggtgacatacagcagccatgaaccaagtaaccctcgc
gacactcacagggttgtgctaaatatttttgatgtgagaactggaaaagtgatgagagat
tttaagggaagtgctgatgaatttgcagttggaggaactggaggtgttactggtgtgtcc
tggccagtctttaggtggagtggtggtaaagaggataagtattttgcaagaataggaaag
aatgtcatctctgtttatgaaacagagactttctcacttattgacaagaaatctatcaag
gttgaaaatgttatggattttagctggtcaccaacagatccaattctttcactctttgtt
cctgaatgcggaaatcaacctgccagggtaagccttgtgcaaatcccaagtaaagaggag
ttgaggcaaaagaatctcttcagtgtaagtgattgcaaaatgtattggcaaagcaatgga
gactaccttgctgtcaaagttgaccggtacacgaagaccaagaaaagcacatacactggt
tttgagctgttcagaatcaaagaacgggatattccaattgaggttttggagcttgacaac
aagaatgataaaattattgcatttgcttgggagcctaagggtcacagatttgctgtcatc
cacggtgacaaccccaggccagatgtcagtttctactctatgcggtctggcactaacacg
ggccgtgtttcaaagctgacaactctcaagggaaagcaggctaatgctctctactggtca
cctggaggccgcttcattattttggctggaatgaaaggtttcaatggacagttggaattc
tttgatgtcgatgagcttgataccatggcatctgctgagcattttatggcaacagatgtc
gaatgggatccaactggaaggtatgtagcgacagctgttacttcagttcatgagatggaa
aatggattcaacatctggtctttcaacggaaagctactgtataggatactcaaggatcat
ttcttccagtttttgtggcgccctaggccaccatccttcttgagtaaggagaaagaggaa
gagattgctaagaacttgaaaaaatacagcaagaagtatgaagcagaggatcaagatgtt
tcattgctgttgagtgagcaagatcgtgagaagcgaaagaagctgaaagaagaatgggaa
gcatggattaatgagtggaagcagttgcatgaagaggagaaaatggaaagggaaaagttg
cgtgatggggaagccagtgatgaagaggaggaataccaggcaaaggaagttgaagtagag
gaaatactaaaagttgatgaggaggttattccttttgaagagagccaacagtga
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