Solanum stenotomum: 125875291
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Entry
125875291 CDS
T08385
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sstn
Solanum stenotomum
Pathway
sstn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125875291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125875291
03009 Ribosome biogenesis [BR:
sstn03009
]
125875291
04131 Membrane trafficking [BR:
sstn04131
]
125875291
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sstn04147
]
125875291
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
125875291
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
125875291
Membrane trafficking [BR:
sstn04131
]
SNARE
SNARE associated proteins
Others
125875291
Autophagy
Aggrephagy
Other aggrephagy associated proteins
125875291
Exosome [BR:
sstn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
125875291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
CDC48_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_17
AAA_28
AAA_18
ATPase_2
Parvo_NS1
ABC_tran
IstB_IS21
Viral_helicase1
AAA_7
NACHT
NB-ARC
AAA_24
DUF815
AAA_lid_PRS2_C
TsaE
Vps4_C
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
125875291
NCBI-ProteinID:
XP_049412352
LinkDB
All DBs
Position
8:complement(3858004..3864242)
Genome browser
AA seq
805 aa
AA seq
DB search
MTNQAESSDSKGAKKDFSTAILERKKSPNRLVVDEAVNDDNSVVALHPATMEKLQLFRGD
TILIKGKKRKDTVVIALADETCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGLTGDLFDAFLKPYFLEAYRPLRKGDNFLVRGGMRSVEFKVIETDPGEYCV
VAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEEVDLERISKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSSGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLSKDIDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRAEN
PDSMDEDADDEISEIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFSE
TSGGAAASDPFTTSNAGADDDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgactaaccaggccgagtcatctgactcaaaaggtgcgaagaaggatttctctaccgcg
attttggagaggaagaagtctcctaatcggcttgttgttgatgaggcggtcaacgatgat
aactctgttgttgcactgcaccctgctactatggagaagctacagctcttccgtggagat
acaattctcatcaagggaaagaaaaggaaggatacagttgtcattgcacttgccgatgaa
acatgcgatgagccgaagattaggatgaacaaggttgtccgttcaaatttgagggtccgt
cttggagatgttgtgtctgtgcaccaatgcccagatgttaagtatgggaagcgtgtccac
atacttcctatagatgatacaatagaaggtctcactggggatttgtttgatgcgtttctg
aaaccttactttttggaagcatatcgtcctttgaggaaaggagacaatttccttgttaga
ggagggatgagaagtgtggaattcaaagtcattgagactgacccaggggagtattgtgtt
gttgctccagacactgaaatattttgtgagggggagcctgttaaaagggaggacgaggag
agactggacgaagttggctatgatgacgttggtggtgtgagaaaacagatggctcagatt
cgtgaactggtggaattaccattgaggcatcctcaacttttcaaatccattggtgtgaaa
ccaccaaaggggattttactttatggaccccctggttctgggaagaccctgatagccaga
gcagtggctaatgaaacaggtgcatttttcttttgcattaatggaccagaaatcatgtcc
aaattggctggtgagagtgaaagcaatctcaggaaggcattcgaagaggcagaaaaaaat
gctccatctattatattcattgatgagattgattcaattgctcccaagcgagagaagaca
catggtgaagttgagagaaggattgtttcacagctcctgactctgatggatggactgaaa
tctcgtgctcatgtcatagttatgggagctaccaatcgtcctaacagcattgatcctgct
ctcagaaggtttggtaggtttgatagggaaattgacattggtgttcctgatgaaattgga
cgtcttgaagttcttcgtattcataccaagaatatgaagcttgcagaagaagttgatttg
gaaagaatatcaaaagatacacatggttatgtcggtgcagatcttgctgctctttgcact
gaagctgcacttcagtgcattcgagagaaaatggatgtcattgatctggaagatgattcc
attgatgctgaaatattgaattcaatggctgtcacaaatgagcacttccaaactgctcta
ggaacaagcaatccatctgcattgcgtgaaacagttgttgaagtgcctaatgtctcatgg
gaagatattggaggtcttgaaaatgtcaaaagagagcttcaagagactgttcaataccca
gtggagcatccggagaagttcgagaaatttggtatgtcaccttcaaaaggtgttcttttc
tatggtcctccaggatgtgggaaaactcttcttgccaaggcaattgcaaatgagtgtcaa
gccaatttcattagtatcaaaggacctgagctgcttaccatgtggtttggagagagtgag
gccaatgtccgtgaaatttttgacaaggctagacagtctgcaccctgtgtcctcttcttt
gatgagctcgactctattgccactcagaggggaagcagtagtggtgatgctggtggagca
gctgatcgggttctgaaccaacttctgactgaaatggatggcatgaatgcaaagaaaact
gtttttattattggggccacaaacaggcctgatattattgaccctgcacttctgcgacct
ggtcgacttgaccagttaatttatatcccactgccagatgaagactcacgccatcagatt
ttcaaggcatgtcttagaaaatctcccctatcaaaagatattgatttgagagctcttgcc
aagtacactcagggatttagtggagctgatatcactgagatctgtcaacgggcatgcaaa
tatgccataagagagaacattgagaaagatatagaaaaggaaaagaggcgagcagagaat
cctgattctatggatgaggatgctgatgatgagatatcagagattaagcctgctcatttt
gaggagtccatgaagtatgcacgacgaagtgtgagtgatgccgatattcgtaaataccag
gcatttgctcagaccttacagcaatctcgaggttttggaactgaatttcggttttctgag
accagtggtggggctgctgcatctgaccccttcacaacttctaatgctggagctgatgat
gatgacttgtatagctaa
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integrated database retrieval system
