Solanum stenotomum: 125875569
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Entry
125875569 CDS
T08385
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125875569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125875569
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125875569
mRNA degradation factors
5'-3' decay
Decapping complex
125875569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
DUF6124
Phage_lysozyme
Motif
Other DBs
NCBI-GeneID:
125875569
NCBI-ProteinID:
XP_049412511
LinkDB
All DBs
Position
9:complement(55953352..55963233)
Genome browser
AA seq
1404 aa
AA seq
DB search
MASSPGNPNQPGGTGTGTGPFDIHKFFKPSTPTNPNPQNPTLIPSPFPPPNASYPPPTVA
GVGPGGVYSYPPQTTTPFHHQPQFTHHSPQYSIHDTQLMHQQRSMSFPTPPLQPPPPTSS
PHQFPNPNPGARLMALLSAPPSTLEVPIQSTMPMPPIQPTTSGSDLSDFSSGPNVGIAHS
GPGPMRMPSSKLPKGRHLNGDHIVYDIDVRFPSEVQPQLEVTPITKYGSDPGLVLGRQIA
VNKTYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASVDGRVYIW
KITEGPDEEEKPQITGRIVIAIHIVGEGESVHPRVCWHCHKQEILVVGIGKRILKIDTTK
VGKGVVFSADEPLRCPVDKLVDGVQLIGTHDGEVTDLSMCQWMTTRLVSASVDGTIKIWE
DRKPLPIAVLRPHDGHPVSSVTFSAAPHRPDHIVLITGGPLNREIKIWASASEEGWLLPS
DAESWRCTQTLELKSSAEANVEEAFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGPNPE
ATRMDYIAGFTVTMPILSFTGTSDLLPHGEQIVQVYCVQTQAIQQYALDLSQCLPPPTES
VVFERTESGISHDAATIEGFAPVDPPGSKQQEVPLSSSAPKSAVHDIGSEISQTARYPTS
TAPTELTTSSIPETKSSTLPSVTSDNDIAPSASPPPPLSPKLSRNLSGFRGPSNSFGADT
FDNDQVGNQKVVEYPVDPQKDGTPPNLSDIASLDDEHKTSRDDVPPGISHPVKFKHPTHL
VTPSEILMARSSSEVSIVNEQKSESEMNVQDAVTNNDTRTVEMEVKVGGEAKFSQKTDMG
SQDLHSFVSENKEKVFCSQVSDLGLEMARECRALPPETYPVEESRQFDGVSGSEGPSQPS
VTPEEDHDSAKDISEKDLDSTMSVTVHQPSAPSAKGKKQKGKNSQVSGPSSASPSAFNST
DSPNHTVVSSSTPSMESAFSQILSMREMLNQVLTMQKETQKQMEMMVAVPVTKEGRRLEA
ALGRSMEKSVKANSDALWARLQEESAKQEKSLRDRTQQITNLISNCLNKDMPGLMEKLMK
KELAAVGQAVARSITPTIEKTISAAISEAFQKGVGDKAVNQLEKAVNSKLEATVARQIQA
QFQTSGKQALQETLKSTLEVSVIPAFEMSCKAMFEQVNSTFQKGIADHTVAAQQQFESVH
SPLAIALRDAINSASAMTQTLSGELADSQRQLLALAVSGANSQSANPLNHMNNGSLLHEK
IETPPDPTKELSRQLGEHKYEEAFTAALQMSDVSIVSWLCSQVDLAGILSLNPLPLSQGV
LLSLLQQLSCGISSETVQKLSWMRDVLSAINPNDPLIVVHVRPIFEQVYQMLLQRRNSAT
TPPAELSIIRLLVHVINSMLMAVK
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcctggcaatccgaaccaaccaggtggtactggtactggtactggacca
tttgatatacacaaattcttcaaaccctcaaccccaacaaaccctaatccccaaaaccct
actttaattccatccccttttccacctcctaacgcttcatacccaccacccaccgtcgcc
ggagtcggacccggtggggtttactcttacccacctcagactacaaccccttttcatcat
caacctcaattcactcaccactcgccgcaatacagtatacatgacacccagttaatgcat
cagcagagatccatgtctttccccactccaccacttcaaccaccaccacctactagtagt
cctcatcaattccctaaccctaaccctggtgctaggcttatggcactgttgagtgcccca
ccgtctactttggaagttccgatacagtccactatgcctatgcctcccatacaacctact
acttcggggtctgatctttcggatttctcttctggaccgaatgttggcattgctcattcg
ggtccgggaccaatgagaatgccgagcagtaagttgcctaaagggagacatttgaatggt
gatcatattgtttatgatatagatgttaggtttcccagtgaggtgcagccacagctggag
gttactcctattactaagtatggttcggatcccggtcttgtattaggcaggcaaattgca
gttaacaaaacctatatatgttacggattgaaattgggggctattcgggttcttaacatt
aatactgcattgagatcattgcttaaaggtcttgcgcagagggtcacagacatggctttc
tttgcagaggatgttcatctcttggctagtgcgagtgttgatggccgggtttatatatgg
aaaattactgaaggaccagatgaagaagagaagccacaaattacaggaaggattgtcatt
gctattcatattgttggtgaaggggaatctgttcacccacgtgtttgttggcattgtcat
aaacaagaaattcttgtggttggaatcgggaaacgcattttgaaaattgataccactaaa
gtgggaaaaggtgttgtattttcagcagatgaacctctgaggtgccctgttgacaagttg
gttgatggggtacaacttattggtacccatgatggagaagtgactgatttatcaatgtgc
cagtggatgaccactcgtttggtatctgcatcagtggatggcacgataaagatatgggaa
gaccggaagccacttccaatcgcagttctcaggcctcatgatggtcatcctgttagttct
gttaccttctcggctgccccacaccgcccagatcacatcgtactcatcactgggggtcct
cttaatcgggaaataaagatatgggcatcagcgagtgaagaaggctggttgcttcccagt
gatgctgagtcatggcgctgtacacagacattggagctgaagagttcagctgaggctaat
gtcgaagaggcattttttaaccaagttgtagctttgtctcaagcaggtctgctcctacta
gctaatgcaaaaaagaatgctatatatgctgtgcatctagagtatggcccgaatccggag
gctacccggatggattacatagcaggatttacagtcaccatgccaattttgagtttcact
gggacgagtgacctattgccccatggtgaacagattgtgcaggtgtattgtgtccagaca
caggccattcagcagtatgccttggacctgtcccagtgcttaccacctccaacagagagt
gtggtttttgaaaggacagaatctggcatttcgcacgatgctgcaaccattgaaggattt
gctcctgttgaccccccaggaagtaaacagcaggaggttcctttatctagttcagcacct
aaatcagcagtacatgacattggctctgagatttcacaaacagctagatatcctacaagt
actgcacctactgaattgaccacctcctccattccagaaactaaatcgtctactttgccc
agtgtaactagtgataatgatattgcccccagtgcatcacctcctcctcctttgagtcct
aaattgtctcgaaacttatctggttttagaggtccgtcaaacagctttggggcagacacc
tttgataatgaccaagttggaaatcaaaaagttgttgaatatccagttgatccgcaaaag
gatggcacgcccccaaacttgtcagatattgcttccttggacgatgaacataaaacgtca
cgggatgatgttccccctggtatcagtcatcctgtaaagttcaagcacccaactcatttg
gtgactccttcagagatattgatggctagatcatcctctgaggttagcattgttaatgag
cagaaaagtgagtcagaaatgaatgttcaggatgctgtaactaacaatgacacccgcact
gtagagatggaggttaaagttggtggtgaagcaaaattcagtcaaaaaactgatatgggc
tctcaagaccttcattcttttgtgtctgaaaataaagagaaagttttttgctctcaagta
tctgatcttggattagaaatggctcgagaatgtcgtgccttacctcctgagacctatcct
gtagaggaatctaggcagtttgatggggttagtggaagtgagggaccatctcaaccttca
gttacaccagaggaagaccatgactctgcaaaggacatctctgaaaaagatttagactca
actatgtcagtcactgttcatcaaccatcagctcccagtgcaaaagggaaaaagcaaaag
gggaagaattctcaagtgtctggcccatcttcagcatcgcctagtgcttttaattcaaca
gattctccaaatcacactgttgtcagctcaagtaccccttctatggaaagtgctttctca
caaattctgtccatgcgtgagatgctaaatcaggttctgactatgcaaaaagaaacacaa
aagcagatggaaatgatggttgctgttccagtgaccaaagaaggaagaagacttgaagct
gccttgggacggagcatggaaaaatctgttaaggccaattctgatgctttatgggctcgt
ttacaagaagagagtgcaaaacaggagaagtctctccgtgatcgtacacaacaaattacc
aatttgatctctaactgcttaaacaaggacatgccaggtctgatggaaaaattaatgaag
aaagagctagcagctgttggacaagctgtagcacgcagtattacccctactattgagaaa
acaatatcagctgcaatttcagaggcattccagaaaggagttggtgacaaggcagtgaac
caactagagaaagcagtaaactccaaacttgaagctactgtagctagacaaatccaagca
caattccaaacctctggcaagcaagctcttcaggaaacactgaaatctactctggaagtt
tcagtgatccctgccttcgagatgtcatgcaaggcaatgtttgagcaagtaaattcaaca
tttcagaaaggcattgctgaccacacggttgctgcacaacagcaatttgagtctgtgcat
tcgcctttggcaattgctctaagagatgccatcaattcagcatcggcaatgacacaaaca
ttgagcggagagcttgctgatagtcagaggcagttgcttgctcttgcagtttctggagca
aattcccaatcagcaaatccactcaaccacatgaataatggatcattgctacatgaaaag
attgagacacctccagatccaaccaaagagctatctagacagttaggggagcacaagtat
gaggaagcattcactgcagcattacaaatgagtgatgtgtccattgtgtcgtggttatgc
tctcaggttgatttggctgggattttatccttgaatcccctccctttgagccaaggagtg
ctcctttcacttcttcagcagttgtcatgtggtattagttcagagacagtccaaaaactc
tcttggatgagggatgtgctatctgccataaatccaaatgacccactgatcgtagtgcat
gttcggcccatctttgagcaagtatatcagatgttactacaacgcagaaacagtgctacc
acgcctcctgctgaactttcaatcatccggcttcttgtgcatgttatcaattcgatgctg
atggctgttaaatga
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