Solanum stenotomum: 125875753
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Entry
125875753 CDS
T08385
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125875753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125875753
Spliceosome [BR:
sstn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125875753
Complex C
U5 SnRNP specific factors
125875753
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
125875753
NCBI-ProteinID:
XP_049412741
LinkDB
All DBs
Position
9:complement(47971006..47983729)
Genome browser
AA seq
2389 aa
AA seq
DB search
MWSGNGQDMWNNSNIAPPGTSGGPPPPPSMMQPPPPPSSMMPPPPGTSSGHSMMPPGTSG
GGASGAGPPLPPPSYTVLPTEAQLEEKARKWMQLNSKRYSDKRKFGFVETQKEDMPPEHV
RKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKILYHITGAI
TFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVD
PLEPIQLELDEEEDSAVYNWFYDHKPLVKTKLINGPSYRRWHLSLPIMATLHRLAGQLLS
DLTDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSP
LRTEYRIAFPHLYNNRPRKVRLGIYHTPMIMYIKTEDPDLPAFYYDPLIHPIVTKDRREK
KVSDDDDDDDFALPEGVEPLLTETPIYTDTTAAGISLLFAPRPFNMRSGRTRRAEDIPLV
SDWFKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTEL
DWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLC
REILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKD
LKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKG
VAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWK
VPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAE
QERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLK
ESYSVAVRLNQQQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIP
VYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGVWD
TSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNS
YGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITYSDSRVETRHPIRL
YSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDV
NLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAF
SNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTA
LIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLG
MLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVW
AEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQ
VLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKA
SGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKI
PTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSC
ADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMD
YTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRER
IRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGA
IFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRK
GMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKS
ISSYTAFSRLILILRALHVNNEKAKMLLKPDKSVITEPHHIWPSLTDDQWMKVEVALRDL
ILSDYAKKNNVNTSALTVSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKT
TNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIM
PKNILKKFICIADLRTQIAGYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLPSGLPEH
DFLTDLEPLGWMHTQPNELPQLSPQDVTSHARVLENNKHWDGEKCIILTCSFTPGSCSLT
AYKLTPTGYEWGRANKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGV
KHTVSMKYGVKLGTPREYYNEDHRPTHFLEFSNMEEGDTAEADREDTFT
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atgtggagtggaaacggacaagatatgtggaacaatagtaatatagcaccaccaggtact
agcggaggaccaccgccgccgccgtcaatgatgcagccacctcctccgccgtcgtctatg
atgcctccgccacctggtacgagctcaggacactctatgatgcctcccggtacaagtggt
ggaggagctagtggtgctggaccgcctttaccacctccatcttatactgttttgccgact
gaagctcagcttgaagagaaagctaggaaatggatgcagcttaactctaagcggtatagt
gataagcggaagtttggatttgtggagacgcaaaaggaggatatgcctccggaacatgtt
cggaagattattagggaccatggggatatgtcttcaaaaaaatatcgtcatgataaacgt
gtgtatctcggagctcttaaatttgtaccgcatgctgtttacaaactccttgagaacatg
cctatgccatgggagcaggttcgagatgtaaaaatcctgtaccatattactggtgctatt
acatttgttaatgagattccatgggttgtcgaacctatatatctggctcagtggggcaca
atgtggatcatgatgagaagggagaagagagaccggcgacatttcaagagaatgcgtttt
cctccctttgacgatgaggagccaccgttagattatgctgataatcttttggatgttgat
cctttggagccaatccagttggagttggatgaagaagaggattctgcggtttataactgg
ttttatgaccataagccattggtgaaaacaaagcttattaatggtcctagttaccgcagg
tggcatttgtccctccctataatggcaacacttcaccgactggctggacagcttctttca
gacctgactgatcgcaattacttctacttgtttgatatggagtcctttttcactgctaaa
gcattgaacatgtgcattcctggtggtccaaagttcgaacctttatatcgtgacatggag
aaaggagacgaagactggaacgagttcaatgatatcaacaaattgatcatcaggtcacca
cttaggacagagtacagaattgccttccctcacctctacaacaacaggccaagaaaggtg
aggcttggcatatatcacactcccatgatcatgtacataaaaacagaggatcctgatcta
cctgctttttattatgatccgctgatacatcccatagtcaccaaggaccgcagagagaag
aaagtttctgacgatgacgatgatgatgattttgccttacccgagggtgtggaaccgttg
ctgactgagactccaatctatactgatactactgctgctggtatttccctattgtttgcc
ccacgcccatttaacatgagatctggtcgaacaagacgtgctgaagatattccccttgtt
tctgattggtttaaggaacactgtcctccatcatatcctgtcaaggttcgcgtcagttat
cagaagttgttgaaatgttttgtattgaacgagttgcatcacagaccccccaaggcccag
aagaagaagcacctctttcgctcacttcaagccacaaaatttttccaaaccacagaactt
gattgggctgaggctggtcttcaagtttgtaagcagggatataatatgctgaatctcttg
atccataggaagaacctgaattatctacatcttgattacaattttaatttgaagcctgtt
aagacactaactacaaaggaacgtaagaaatcgcgatttggaaatgctttccacctgtgt
cgtgaaattctgcgtttgacaaagcttgttgttgatgccaatgtccagtttcgtctggga
aatgttgatgcatttcagctggcagatggcttgcaatacattttttctcatgttggtcag
ttgacgggtatgtatcgttacaagtacaggcttatgaggcagattcggatgtgcaaggat
ctgaaacatttgatctattatcgatttaataccgggccggttggaaaaggtcctggttgt
ggtttctgggcacctatgtggagggtgtggttattctttcttcggggtatagtacctctt
ttggaacgttggttaggaaatctactggcaaggcaatttgagggtcgccattcaaagggg
gtggccaaaactgtcacaaagcaacgtgttgaaagccacttcgatttggagctccgtgct
gcagtaatgcatgatgtccttgatgctatgccagaggggatcaagcaaaataaagcaaga
accatcttacagcatctaagtgaagcatggcgttgttggaaagcaaatattccttggaag
gtccctggtttgcctgttcctattgagaacatgattctccgctatgtcaaatccaaagct
gattggtggacaaatgttgctcactacaaccgtgaacgtataagaagaggagcaactgtt
gacaagaccgtgtgccggaaaaaccttggaagattgactcgcctttggctgaaggctgaa
caggagcggcaacataactacttgaaagacggaccatatgttactccagaagaagcagta
gccatatatactaccactgtgcattggttggagtcgaggaagttttctcctataccattc
cctccgttgtcatacaagcatgacacaaagttacttatccttgcacttgagagactgaaa
gaatcttacagtgtggctgtgaggctaaaccagcagcaaagggaagagttgggtctcatt
gagcaagcttatgataatcctcatgaagcattatcacgaattaagcgtcatctgcttact
cagcgtgccttcaaagaagttggaattgagtttatggacttgtacagctacctcattcca
gtttatgagattgagccacttgagaagattactgatgcatatctggatcagtacctatgg
tatgaaggtgataagcgtcatctctttccaaattggattaagcctgccgactcagagcca
ccacctctgttggtgtacaaatggtgtcaaggcataaacaatttgcaaggagtatgggac
actagtgaaggacagtgtgtggtgatgctgcagaccaagtttgagaagttctttgaaaag
atcgacttgaccatgctgaacaggcttctgcgtttggtgctcgaccacaatattgctgat
tatgtcactgcaaaaaacaatgttgtactgtcttacaaagatatgagccatacaaattca
tacgggctgatacgcggtcttcagtttgcttcatttgttgtacagtactatgggcttgtg
ttggatcttttgctccttggtttaactcgagcaagtgaaattgcgggtccaccacagatg
cctaatgagttcataacctatagtgattctagagtggaaacaaggcatccaatccggttg
tactctcgatacattgacaaggtgcatatattatttcgcttcactcatgaagaggctcgg
gaccttatccaaagatatcttactgagcatcctgatcccaacaatgaaaatatggttggt
tataacaacaagaaatgctggccaagggacgcaagaatgaggctcatgaagcatgatgtt
aatcttgggagaagtgtcttctgggacatgaagaatcgactgcctagaagtatcactact
ttggagtgggaaaatagctttgtctctgtttatagcaaagataatccgaacttgctcttc
agcatgtgtgggtttgaagttcggatactgcctaagattagaatgacccaagaggcattc
agcaatacaagagatggagtctggaatttgcaaaacgagcagactaaggaacgcacagct
gttgccttcctgcgtgtagatgatgagcacatgaaggtgtttgagaatcgtgttaggcag
atccttatgtcctctggttctacaacattcacaaagatcgttaacaaatggaacactgct
cttattggcctcatgacatatttccgtgaagcaacagtgcatacacaagagttgctggac
ctgctggtcaaatgtgaaaacaagatacagactcgtattaagattggtttgaactcaaaa
atgcctagcaggtttcctcctgttattttctacacaccaaaggaaattggagggcttgga
atgttgtcaatgggtcacatattgatcccccagagtgatcttaggtatagtcagcaaaca
gatgttggtgtcacacatttcagaagtggaatgagccatgaagaggaccaattgatccca
aatctctaccggtacatacagccttgggaaagtgagtttatagactctcagagagtttgg
gccgagtatgctttgaaaaggcaggaagcccaggcacagaataggcgcttgactcttgaa
gatttggaagattcgtgggatcgtggaatacctcgaatcaatacattgttccagaaggat
cgccacacccttgcatatgacaaaggatggagagtaagaacagattttaagcagtaccaa
gttcttaagcagaatccgttctggtggacacaccagaggcatgatggaaagctatggaac
ctgaataattatcgtactgatgttattcaagctcttggaggagttgaaggaattcttgag
catacattattcaaaggaacatatttccctacttgggagggtcttttctgggagaaagct
tcaggttttgaggaatccatgaagtacaagaaactgactaatgctcaacgatctgggctt
aatcaaattccaaatcgtaggtttacactttggtggtcaccaaccataaatagggcaaat
gtctatgttggtttccaagtacagctggatctgactgggatatttatgcacgggaaaatt
ccaactctgaagatatctttaatacagatattccgtgcacatttgtggcagaagatccat
gagagtgtcgtcatggatctctgccaagttttggatcaagagttggatgcattggaaatt
gaaactgtacagaaggaaacgattcatccaagaaagagttacaaaatgaatagctcgtgt
gctgacatcctcctctttgctgcgcatagatggccaatgtcaaaacctagtcttgtggct
gaatcaaaggatgtgtttgaccagaaagctagtaacaaatactggatagatgtgcagctt
cggtggggcgactacgattctcatgacattgagcgttatacacgagcaaagttcatggat
tacacaacagacaacatgtctatttatccatcgcctactggtgttatgattggacttgac
cttgcttacaacttgcattccgcctttggaaactggtttcctggttcaaaaccattgctt
gcccaagctatgaacaagattatgaagtcaaatcctgcgctctatgtgctgagggaacgc
ataaggaaagggttgcaactgtattcttcagagcccacagaaccatatttatcatctcag
aactatggagagatattcagcaatcaaatcatctggtttgttgatgacacaaatgtgtac
cgtgtgaccatccacaagacctttgagggaaatctgacaaccaagcccataaatggtgca
attttcattttcaatcccaggacaggtcaactgtttttgaaggtcattcacacaagtgtg
tgggcagggcaaaagcgtcttggccaactggcaaagtggaaaacagccgaagaagtggct
gcgcttgttaggtctttgcctgttgaagaacaaccaaagcaaattattgtgactcggaag
ggaatgcttgatccattggaggtccacttgctcgattttccaaatattgttatcaaagga
agtgagctgcaattaccattccaggcttgtttgaagatagagaaatttggtgatctgata
ctgaaggctacagagcctcaaatggttctgttcaacatatatgatgattggttgaagagt
atctcatcttatacagcattctccaggctcatcctcattctgcgtgcactccatgtgaac
aatgagaaggctaagatgttactcaagcctgacaagtctgtcattaccgagcctcaccac
atctggccttcacttacagatgaccagtggatgaaggttgaggtagcgcttcgagatctc
attctctcagactacgcaaaaaagaacaatgtgaacacatcagcattgacagtgtctgag
atccgtgatattatacttggagctgagataactccaccatcacagcagcgccaacagata
gctgagattgagaaacaggctaaggaagcaagtcaactgactgctgttaccacaaagaca
actaatgtccatggtgatgagttgattgttactacaacaagtccctatgaacaagctgcc
tttggctctaaaacagattggcgtgtcagagcaatttctgctacaaatctctatctccgt
gtgaaccacatatatgtaaattcggaggacataaaggagactggatatacttacatcatg
ccaaaaaatattctgaagaagttcatctgcattgctgatctgcggacacaaattgctggt
tacttgtatggtgtaagtccaccagataatcctcaggtgaaagaaatccggtgtattgca
atgcctccacagtggggtacacatcagcaggtgcatctaccttctggtcttcctgagcat
gattttctcactgacttggagccattgggatggatgcatacacaaccaaatgagcttcct
cagttatcgccacaggatgtgacttcacatgctcgggtcctggagaacaacaaacactgg
gatggagagaagtgtattatattgacatgcagtttcacgccagggtcttgttcattaact
gcatataagttgacgccaaccgggtatgaatggggacgtgctaacaaggatacaggaagt
aaccctcatggttacctgccaactcattatgagaaggtccagatgctgttgagtgaccga
ttccttggcttttacatggtacctgataatggaccttggaattacaacttcatgggagtg
aaacacactgttagcatgaaatatggagtgaagttaggtacacctcgtgagtactacaat
gaggatcacagaccaacgcatttcctggaattcagtaatatggaggaaggtgatactgct
gaggcagatcgagaggatacatttacataa
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integrated database retrieval system
