Solanum stenotomum: 125875809
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Entry
125875809 CDS
T08385
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125875809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125875809
03012 Translation factors [BR:
sstn03012
]
125875809
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125875809
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125875809
Translation factors [BR:
sstn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125875809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
R3H
OB_NTP_bind
DEAD
HA2_C
Ank_2
ATPase
HA2_N
nSTAND3
Ank_5
AAA_19
AAA_22
ABC_tran
Rad17
AAA_7
AAA_23
AAA_16
Sigma54_activat
PhoH
AAA_11
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
125875809
NCBI-ProteinID:
XP_049412804
LinkDB
All DBs
Position
9:11801528..11817464
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AA seq
1205 aa
AA seq
DB search
MASTAPSSSGVGKKRQKKGQKQQEVTNVAESTQIRVAQVLEQFRASNDEVYTFESNLSNR
DRAAVHKLCRKMGMKSKSSGRGDQRRISIFKTKQNMDTLKGKDVLSCFKFSEEAKYALQD
LFMRYPPGDGETSEQVVGKHSKKFDKLRGKKDDMFCKPAMSMSEIAKRVESFASRIEKTP
NMRQITLQRSKLPIASFKDAITSTIESNQVVLISGETGCGKTTQVPQFILDHMWGKGETC
KIVCTQPRRISATSVSERISAERGESVGDTVGYKIRLESRGGKQSSIMFCTNGILLRVLI
TNGSASFNKEAPGKMGKDPISDITHIIVDEIHERDRYSDFMLAILRDLLPSYPNLRLVLM
SATLDAERFSKYFGGCPVIRVPGFTYPVKTFYLEDVLSIVKSTKNNHLDSTSSSVMPEES
ILTEEYKVALDEAINLAFSDDDLDPLLDLISSEGGPKVFNYQHSLSGVTPLMVFAGKGRV
GDICMLLSFGADYHLRANDGKTALDWAEQENQTEAVEIIKEHMEKSSSSCEEQQHLLDKY
LSTVDPELIDDVLIEQLLKKICIDSEDGAILVFLPGWEDINRTRERLRASHYFNDQSKFS
VIPLHSMVPSVEQKKVFRHPPPGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKSYDPY
NNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRIPIEELC
LQVKLLNPDCKIEEFLQKTLDPPVYETICNAIIVLQDIGALSFDEKLTELGERLGSLPVH
PLTSKMLLISILLNCLDPALTMACASDYRDPFTLPMLPNEKNKAAAAKAELASWYGGRSD
QLAVVAAFEGWKSARETGQESRFCSKYFVSSGTMHMLSGMRKQLASELLRNGFIPGDGSS
CNLNAQDPGILHAVLVAGLYPMVGRLLPPLKNNKKAVIETAGGDKVRLSPHSTNFKLSFQ
KFYEQPLIAYDEITRGDGGLLIRNCTVIGPLPLLLLATEIVVAPGNEEDDDGNDDDESDY
EDADEDNGEECNIKADLSEAHQGEKIMSSPDNTVKVIVDRWIPFESTALDVAQIYCLRER
LAAAILFKVTHPGKVLPEVLAASINAMGCILSYNGMSGISLLHEPVDSLTTMVSATEIGQ
SDPGWNNRMDMNPNISPNSFEYNGQHQRPNMHHQRGGVHVSKGSSAHRGTMHRGHSKRKR
GNGPY
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacagctccatcatcatctggggttgggaagaagaggcagaagaaaggccaa
aaacaacaagaggttaccaatgttgcagaatccactcagattcgggttgcccaagttctt
gaacagtttcgtgcttctaatgatgaagtgtacacatttgaatcaaacctttcaaaccgc
gatagagctgcagttcataagttatgccggaaaatgggaatgaaatcaaaaagttctggg
cgtggggatcaacgtcgtatatctattttcaagactaaacagaacatggacacactgaaa
ggaaaggatgtgctaagttgttttaaattttcggaggaggcaaaatatgctctacaggat
ttatttatgcgatatccacctggtgatggggagacaagtgaacaagtagtcgggaaacac
agtaagaaatttgataaattacgaggaaagaaggatgatatgttctgtaaacctgccatg
agcatgtctgaaattgcaaaaagggtcgagtcatttgcgtcaagaatagaaaaaacccca
aacatgagacagattacattacaaaggtctaagcttccaattgcttccttcaaggatgct
attacatcaactatagaatctaatcaggtggtcttgatctctggtgaaactggatgcggg
aaaactacacaggtccctcaatttattttagatcatatgtggggtaaaggcgagacatgt
aaaattgtctgtactcagccacgacgaatttctgccacatcagtttctgagagaatttct
gctgaaagaggcgaaagtgttggggatactgttggttacaagatacggctggaaagcaga
ggtgggaagcagtcatcaatcatgttttgtaccaatgggattctactgagggtcctgatt
accaatggaagtgccagcttcaacaaggaggcccctgggaaaatgggcaaggatcccatt
tctgatataacccacatcattgtggacgaaattcatgagagggatcgctactccgatttc
atgctcgctattctcagggacttgcttccttcatatccaaatttgcgtttggttctgatg
agtgctacactggatgctgaacgtttttcaaaatactttggtggctgcccagttatccga
gtccctggatttacttatcctgtaaaaacattctatcttgaggatgtactttctattgta
aagtcaactaaaaataatcaccttgattccacctcatccagtgtcatgcctgaggaatca
atattaacagaggagtacaaagttgccttagatgaagcaattaatctggctttttcagat
gatgatctggatccccttttggatctaatatcttctgaagggggaccaaaagttttcaat
tatcagcattctttgagtggagtgacgccattgatggtgtttgctggaaaaggccgcgtt
ggtgacatttgcatgctcctctcttttggtgctgactaccatttacgtgctaatgatggg
aaaactgctctagattgggctgagcaggagaatcagacagaagctgttgaaataattaag
gaacacatggagaaatcatcttccagttgtgaggagcagcaacatttacttgacaaatac
ctatcaacagttgaccctgaactgattgatgatgtccttattgaacaactattaaaaaaa
atatgcatagactcggaggacggggccatccttgttttccttcctggttgggaggacatt
aacagaacacgagagagattgagagcaagccactatttcaatgatcagtctaagttttca
gtgatccctctccattctatggttccttctgtggagcaaaagaaggtttttagacaccct
cctccaggctgccgcaaaatcgttctttcaactaatattgctgaaactgccattaccatt
gatgatgttgtttatgtaatagacagtggacgaatgaaagaaaaaagttatgacccttat
aataatgtttcaactcttcaatcttcatgggtctcaaaagcaagtgcaaagcaaagagaa
gggcgcgctgggcggtgccagccagggatttgttatcatctttattcaaaacttcgagca
gcttcattgcctgatttccaggttcctgagattaagaggattcctatagaggaactatgt
cttcaggtcaagcttcttaaccctgattgcaagatagaagaattcctgcagaaaacactt
gatcctccggtttatgagaccatatgtaatgcaatcattgttcttcaagatattggggcg
ctgtcatttgatgagaaacttacagaacttggagaaaggctaggatctttaccagttcat
ccgcttacaagcaagatgcttttaatttccatcttattgaactgccttgacccagcattg
actatggcttgcgcttctgactatagagatccatttaccctacccatgttgccaaatgag
aagaataaagctgcagctgcaaaagctgagttagcctcatggtatggtggaagaagtgat
caattagcagttgtggctgcgtttgagggctggaaaagtgcgagagaaactggtcaagaa
tcgaggttttgttctaagtactttgtatcttcaggcactatgcatatgctatcaggaatg
cgtaaacaacttgcatctgaactattgaggaatgggtttattcccggagatggatcttcc
tgtaaccttaacgcacaggatccaggcatactacatgctgttcttgttgctggtttgtac
cctatggttggaagactgctcccgcctctgaaaaataataagaaggctgtcattgagact
gcaggtggtgataaagttcgattaagccctcattcaactaacttcaagctttcattccaa
aaattctatgagcaaccattaattgcatatgatgagataactcgtggtgatggaggtctg
cttataaggaattgcactgtcattgggccactcccactgttgttgctggcaacagagatt
gtagtggctcctggaaatgaagaagatgatgatggcaatgatgatgatgaaagtgattat
gaagatgctgatgaggacaatggcgaggaatgtaatattaaagcagatctgtcagaagcc
catcaaggagagaaaattatgtcttctcctgataatacagttaaggtcattgttgataga
tggattccttttgagtcaacagctcttgacgttgctcaaatttactgcctgagagagaga
ttagctgcagcaattttattcaaggtcacacatcctggaaaagttcttcctgaggttctt
gcagcctctataaatgcaatgggttgtatcttgtcttacaatgggatgtcaggaatatca
ttgctgcatgagcctgtggactcacttactacaatggttagtgctactgagattggtcag
tctgatcctgggtggaataacagaatggatatgaatcccaacatttctcccaattcattt
gagtacaatggccagcatcagcgccccaatatgcatcatcaaagaggtggcgttcatgta
tcaaagggatcgtctgcgcatagaggtaccatgcatagaggtcattctaagcggaagcgt
ggaaatggaccttattaa
DBGET
integrated database retrieval system
