KEGG   Solanum stenotomum: 125875811
Entry
125875811         CDS       T08385                                 
Name
(RefSeq) replication factor C subunit 3-like isoform X1
  KO
K10756  replication factor C subunit 3/5
Organism
sstn  Solanum stenotomum
Pathway
sstn03030  DNA replication
sstn03410  Base excision repair
sstn03420  Nucleotide excision repair
sstn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    125875811
   03410 Base excision repair
    125875811
   03420 Nucleotide excision repair
    125875811
   03430 Mismatch repair
    125875811
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sstn03032]
    125875811
   03036 Chromosome and associated proteins [BR:sstn03036]
    125875811
   03400 DNA repair and recombination proteins [BR:sstn03400]
    125875811
DNA replication proteins [BR:sstn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    125875811
  DNA Replication Termination Factors
   ELG1-RFC complex
    125875811
Chromosome and associated proteins [BR:sstn03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    125875811
DNA repair and recombination proteins [BR:sstn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     125875811
  Check point factors
   HRAD17(Rad24)-RFC complex
    125875811
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 AAA_lid_RFC1 Sigma54_activ_2 Mg_chelatase AAA_16 AAA_5 AAA_23 DUF815 AAA_22 ABC_tran RsgA_GTPase AAA_29 nSTAND6 AAA_2 RuvB_N AAA_24 T2SSE
Other DBs
NCBI-GeneID: 125875811
NCBI-ProteinID: XP_049412811
LinkDB
Position
1:complement(77965610..77987766)
AA seq 354 aa
MLWVDKYHPKTLEKVIVHQDVAQNLRKLVSEGDCPHLLFYGPSGSGKKTLIMALLRQIFG
PSADKVKVENKIWKVDAGSRTIDVELTTLSSTHHVELNPSDAGFQDRYVVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCSNSSSKVTEAVRSR
CLNVRINAPMEEEIVSVLEFIAKKEGLQFPQGFTARIVEKSNRNLRRAVLTFESCRVQQY
PFTNNQTIPPMDWEQYVSEIASDIMKEQSPKRLFEVRGKLYELLTNCIPPEIILKRLLFE
LLKKLDSELKHEVSNWAAHYEHRMRLGQKAIFHLEAFVAKFMSIYKSFLISTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggttgacaagtaccaccctaaaacattagagaaagttattgtacaccaggat
gttgctcaaaatcttcgtaaactggtctcagagggagattgtcctcatctcctcttttac
ggcccttccggttcaggaaagaaaactctcattatggcacttcttagacagatttttggt
ccaagtgctgacaaggttaaggttgagaacaagatttggaaagttgatgctggttctcgg
acaattgatgtggagctcacaacattgtcaagcactcaccatgtggaattaaatccaagt
gatgccggatttcaggacagatacgttgttcaagagataatcaaagaaatggccaagaat
agaccaattgacacgaaagggaaaaaggggtttaaagttttagtgctaaatgaagttgac
aagctctcaagagaagcacaacattctcttcgaagaacaatggagaagtacagtgcatca
tgtcgcctgattctttgctccaacagttcttcaaaggtcactgaagcagttcgctcacga
tgccttaatgtgcgaataaatgcaccaatggaggaagagattgttagtgttttggaattt
attgccaaaaaggaaggacttcaatttccacagggttttaccgcccgcattgtggaaaag
tcaaataggaatctgaggagggcagttttgacatttgagtcttgccgtgttcaacagtat
ccctttacaaacaaccaaactatacctccaatggactgggagcaatatgtttcagaaatt
gcatcagacataatgaaagagcagagccctaaaaggttattcgaggtaagaggaaagtta
tatgagctactaactaattgtattccccctgaaattattttgaagaggctacttttcgaa
ctattaaagaaattggattcagagttgaagcatgaggtgtccaactgggctgctcattat
gagcataggatgcgccttggacagaaggctatatttcatcttgaagcatttgtggccaaa
ttcatgagcatctacaagagtttccttatttcaacatttggctaa

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