Solanum stenotomum: 125875870
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Entry
125875870 CDS
T08385
Name
(RefSeq) protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125875870
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
125875870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_8
TPR_12
TPR_14
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_6
TPR_11
TPR_9
TPR_7
TPR_10
ANAPC3
ARM_TT21_5th
TPR_Slam
Fis1_TPR_C
ARM_TT21_C
ATP-grasp_6
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
125875870
NCBI-ProteinID:
XP_049412872
LinkDB
All DBs
Position
9:complement(17187861..17208879)
Genome browser
AA seq
1095 aa
AA seq
DB search
MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVDQFR
QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFIMATQYYNKA
SRIDMHEPSTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVQFSRGRYSD
SLELYKRALQVYPDCPAAVRLGIGLCRYKLGQLDKAKQAFCRVLQLDPENVDALVALAIL
DLQNNEASGIRRGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTTH
GPTKSHSYYNLARSYHSKGDYEKAGMYYMASVKESSKPHEFVLPYYGLGQVQLKLGDLRS
SLANFEKVLEVHPESCEAVKALAHIYVQLGQAEKVQEYLKKATKIDPRDPQAFLDIGELL
ISNDPAAALEAFKTARNLLKKSNEEVPIELLNNIGVLHFEREEFELATQSFKEALGDGIW
IRFLDAKARSEDPTSGGLLYPNGEAQSDLLKSAQYPIDASASVRQYKDLQLFHRLEEQGS
TVELPWNKVSTLFNMARLLEQLHDTETASIFYRLILFKYPEYADAYLRLASIAKARNNVQ
LSNELISDALKVNEKYPDALLMLGDLELKNDDWVKAKETFRAAKDATDGNDSYATLCLGN
WNYFAAIRNEKRAPKLEATHLEKAKELYTKVLFQHNANLYAANGAGVVLAEKGQFDISKD
LFTQVQEAASGNVFVQMPDVWINLAHVHFAQGSFALAVKMYQNCLRKFYYNTDSQVLLYL
ARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDTGVALQKFSASTLQKTKRTVDEVRATV
AELKNAVRLFSLLSAASNLHVHGFDEKKIETHVGYCKHLLEAAKVHCEAAEREDQQNKQR
IELARQVTLAEENRRKAEEQRKYQLERRKQEDELKQVMQQEQHLERIKEQWKSSTPASKR
KDRPQNEDDEGGHGERRRKKGGKRRKRDKKSHYESEEAEAEMDDQEEVDDVDRNRNYEES
YDQTNDHDDQAENNPQDLLAAAGLEDSDAEDDTVAPSSNASRRRQALSESDEDEPLQRQG
SDGEDGENVAADDDE
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgtatacattccagtacaaaactcggaagaggaagttagggtagcattggac
caactccctagggatgcttctgacattctcgacattcttaaggccgaacaagctcctctt
gatctctggcttataattgctagggaatatttcaaacaaggcaaagtcgatcagtttcgg
caaatcttggaagaagggtctagcccagagattgatgaatattatgcagatgtgaggtat
gagaggattgccattctaaatgcattaggtgcatattacagttatcttgggaagattgag
acaaaacaaagagaaaaggaagagcactttataatggcaactcaatattataataaagca
tccagaattgacatgcacgagccctctacgtgggttgggaaaggtcagcttttacttgcc
aagggcgatgtagagcaggcatttgctgctttcaagattgtacttgatggagatcgtgat
aatgttcctgctctcctgggtcaggcctgtgttcagtttagccgtggacgatattctgat
tcactggagctatataagagggccttgcaagtgtatcctgactgtcctgctgcggtaagg
ctcggaataggtctctgtagatacaaattgggccaattggataaggcaaaacaggcattt
tgtcgtgtcttgcagttggatccagaaaatgtggatgctctggtggcactagcaattctg
gatctgcaaaacaatgaagcttctggtattaggagaggaatggaaaagatgcaaagagcc
tttgagatatatccttactgtgcaatggctctaaattatctggccaatcattttttcttc
actggccagcatttccttgtggagcaattgactgagactgcacttgctgtaactactcat
gggccaactaagtctcattcgtactacaatttggcacgctcctaccacagcaagggtgac
tatgagaaagctggaatgtactacatggcgtctgtgaaagaaagcagtaagccacatgaa
tttgtattaccctattacggattgggacaagtacagctgaagttgggagatcttcggagt
tcgttggcgaattttgagaaagtcttggaggttcatcctgaaagttgcgaggcagtgaaa
gctcttgcacacatttatgtgcagcttggccaggcagagaaggttcaggaatatttgaag
aaagccacaaaaattgatcctcgtgatccccaggcctttttggatataggagagctgtta
atttcaaatgatcctgctgctgctttagaggcctttaaaacagcgcgtaatttgcttaag
aaatcaaatgaagaagtaccaatagagttactcaacaatattggcgtcctccattttgaa
agggaagaatttgagcttgctacacaaagcttcaaggaagctttaggtgatggcatatgg
attaggttccttgatgctaaagcacggtctgaggatccaacttctggagggcttttatat
cccaatggtgaagcacaatctgatctgttaaaaagtgcacaatatccaattgatgccagt
gcatctgttcgacaatacaaggacttacagctatttcatagacttgaggaacaaggaagt
actgtggaacttccttggaacaaagtttcgacactctttaacatggcaagattactggag
cagttgcatgacacagaaactgccagcatcttttaccggcttatcttattcaagtatcca
gagtatgcagatgcttatctgaggctggcgtccattgcaaaagcccggaataatgtgcag
ctaagcaatgagttgattagtgatgcgctaaaggtgaatgagaagtatccagatgcactg
ctaatgcttggagatttggaacttaagaatgatgactgggtgaaggcaaaagaaactttt
cgggctgctaaggatgcaactgatggaaatgattcttatgctactctttgtctgggaaat
tggaattacttcgcggcaattcggaatgagaaaagagctccgaaattggaagcaactcat
ctggagaaggctaaggaactttatacaaaggttctcttccagcataatgcaaatctctat
gctgcaaacggtgctggtgttgttttggcagaaaaaggtcaatttgatatttcaaaggat
cttttcacacaggttcaagaagctgccagtggaaatgttttcgtccagatgcctgatgtg
tggattaatcttgcacatgttcactttgctcaaggcagctttgcattggctgtgaaaatg
tatcaaaattgcctgcggaaattttattataataccgacagtcaggtgcttctttattta
gcaagaacacattatgaagctgaacagtggcaggattgtaaaaagactttattaagagcc
atccacttagcaccttcaaattatacgttgagatttgacactggtgtagcactacagaaa
ttttccgcctcaacgttacaaaagaccaagcggactgttgatgaggtgagggcaacagtt
gcagagctgaagaatgcagttcgcttattcagtctattgtctgcagcttcaaatcttcat
gttcatggatttgatgagaaaaaaatcgaaactcatgttggatactgcaagcacttgctt
gaggctgcaaaagttcattgtgaggcagctgagcgggaagatcaacagaataagcagaga
atagaacttgctcgtcaggtcacattggctgaagaaaatcgtagaaaagcggaggaacag
agaaaatatcaactagagagacgaaaacaagaggatgaactcaagcaagtgatgcagcaa
gagcagcatttagagcgtattaaggaacaatggaaaagcagtactcctgcctctaagcgg
aaagacaggccccagaatgaagatgacgagggcgggcatggtgagaggaggaggaagaaa
ggtggtaagcggagaaagagggacaagaaatctcattacgaatctgaggaagcagaagct
gagatggatgatcaggaagaagtggatgatgttgaccgtaacagaaattatgaagaatct
tatgatcaaacaaatgatcatgatgatcaagcagagaataatccacaggatctacttgca
gcagctgggcttgaagattccgatgccgaggatgacactgttgcaccttcatcaaatgca
agtcggcgaaggcaagcactgtcagaatcagatgaggatgagccattgcagaggcaggga
agtgatggagaagatggagaaaatgttgctgcagatgatgatgaatga
DBGET
integrated database retrieval system
