Solanum stenotomum: 125875940
Help
Entry
125875940 CDS
T08385
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sstn03036
]
125875940
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125875940
microRNA pathway
RISC loading complex
125875940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
DND1_DSRM
ResIII
dsrm
NAGidase
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
125875940
NCBI-ProteinID:
XP_049412969
LinkDB
All DBs
Position
9:54468114..54506216
Genome browser
AA seq
1622 aa
AA seq
DB search
MGSGGLENGTTSSPSAEPSLITNQLSVLSINDDEHSSVSVEKDPRKIARKYQMDLCKKAL
EENVVVYLGTGCGKTHIAVLLIYEMGHLIKKPQKSICVFLAPTVALVQQQAKVIEESIDF
KVGTYCGKSKHLKSHQDWEKEMEQYEVLVMTPQILLHNLSHCYIRIEFIALLIFDECHYA
QVESDHPYAEIMKIFYKPDVVKRPRIFGMTASPISGKGATVEGLETLLRSKVYSVEDKDE
LEQFVASPKVNVYRYGPGSSYLTKAYSQKLEEIKNQCVKELHKKAVDSTLRNTKKMLKRL
HGHLIFSLENLGVLGALQASCILLKGDHHERHQMVEAEVNANDDSLCDKYLSQVDTVFTS
GCAKDGMNPDLALMEVLKEPYFSKKLLRLIGILSNFGVQPDMKCIIFVNRIVTARSLSYI
LQHLKVLSSWKCGFLVGVHSGLKSMSRKNTNIILNKFRSGELNLLIATKVGEEGLDIQTC
CLVIRFDLPETVASFIQSRGRARMPKSEYAFLVDRGNQRELDLIEHFTRSEAQMNDEISS
RKSLTTVADFQENIYKVDMTGATISSASSISLLHHYCSKLPRDEYFCPKPQFYYFDDIDG
TICKLILPSNAAMHQIVSAPQSSIEAAKKDACLRACKSLHELGALTDYLLPDQADEDEDL
VPDFSDLECCEGEDAREELHEMIVPASLKEPWTETENPVCLNSYYIRFFPFPNDRVYKKF
GLFLKAPLPQEAERMKLDLNLARGRSVKTELIPSGATSFENNEQIQLAEKFQRMFLKIIL
DRSEFISEFVSLEKKDFVDSASKFYLLLPVNLFGHNKISVDWELVRRCLSSPIFGTSVCT
SNNKMSKFEEQLQLANGSKSVHDVANSLVYVPCKDAFFFISDVVKDKNAYSIYKDSKNHV
EHYYDISSVHLLYPDQPLIKAKQLFCLENLLRKKGYSELRDKEEHFVELPPEICQLKIIG
FSKDIGSSLSLLPSIMHRLESLLVAIELKGCLSASFPEGREVAIDHVLEALTTENCHESF
SLERLEVLGDAFLKFAVGRHLFLLHDAFDEGQLTRKRSNAVNNSNLYMVAIRNNLQAYIR
DQSFEPNHFYVVGRPCPVTCNKQTEKKIHGLCGSGTDGAKTEVRCSKCHHWLRKKTIADI
VEALVGAFVVDSGFKAAIAFLKWIGIHTDFKEPQLKSICSASKVFMPLADEIDVLGIEHL
LGYSFIHKGLLIQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLT
DLRSISVNNNTFAVVAVRQGFHSHILCDSSDLRESITRYVNFIGRPDSMKKLGEEPSCPK
ALGDLVESCMGAILLDTGFDLNRAWQIILSFLKPVMSFTRLQLNPTRELYELCQSFGWNL
KFLPSKKDSKFLVEARVNGENVSAAASALNINKKSAQRMAAQKVCSSLKAQGYRPKSKSL
EQVLKTAIKMEAKLIGYDETPCVLTTSCDDLDKHETSESDCDLKVFPVNEKLARSCNFKF
KSTRKLLSPEASVQCNSDQTIMSNGSKEDSKATGGSKTESAKSRLHEICAANCWKPPLFE
CCKETGPSHLKEFTFRVVVEIEETSRVVESYGEAQAKKKDAAEHAAEGALWFLKQEGYLL
DN
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atgggaagcggcggacttgagaatggcaccactagttcaccgagtgctgaaccttcactg
atcacaaaccagctttccgtactgtcaatcaatgacgacgaacattcctctgtttcagtt
gagaaagatcccagaaaaatcgctagaaagtatcagatggatctttgtaaaaaagcatta
gaggagaatgttgttgtatatctgggaacgggctgtgggaaaacccatattgccgttttg
cttatctatgagatggggcacttaataaagaaaccccagaagagcatttgtgtgtttctt
gctcccactgtggcattggtgcaacagcaagccaaggtcatagaggagtctattgacttc
aaagttgggacatactgtggcaaatcaaagcatttgaagagccaccaagactgggagaaa
gaaatggaacagtatgaggtccttgttatgacccctcaaatactgctacataatctttcc
cactgctatatcaggattgaatttattgctcttctgatatttgatgagtgtcattatgca
caagttgagagcgatcatccttatgcggagattatgaagatattttacaaacctgatgta
gtaaaacggccccgtatatttggcatgactgcatctccaatatcagggaaaggtgctact
gttgaaggccttgagaccttactccgttctaaggtgtattctgttgaagacaaggacgaa
ttggaacagtttgttgcatcacccaaggtgaatgtgtaccgctatggtcctggctcctca
tatcttacgaaggcttattctcagaagcttgaagagataaagaaccagtgtgtaaaggag
cttcacaagaaagcagttgacagcactctcaggaacacgaaaaagatgctcaagagactg
catggacatctaattttttctctggaaaacctaggtgttttgggggcgttacaggctagt
tgcattcttttaaagggggatcaccatgagcgccatcaaatggtggaagctgaagttaat
gctaacgatgactctttgtgtgacaaatatctgagtcaggttgacacagtctttacttct
ggttgtgctaaagatggtatgaatcctgatttggcactcatggaagttctgaaggagcct
tacttttccaaaaagcttttacgcctaattggcatcctttccaacttcggggtacaacca
gatatgaaatgcataatattcgttaataggatcgtgactgcaaggtccctttcgtatatt
cttcagcatctgaaagttttatcttcttggaagtgcgggtttcttgtaggagtccactcg
ggattgaagagtatgtcacgaaaaaatacaaatatcattctcaataagtttcgttctggt
gagctcaatttattgattgcaaccaaagttggcgaggaaggacttgatatccagacatgc
tgccttgttatacgatttgatcttcctgaaactgttgccagttttatacagtctagaggg
cgtgcccgcatgccaaagtctgaatatgcatttttggttgatagaggtaaccaaagggag
cttgatttaattgagcattttacaagaagtgaagctcagatgaatgatgaaatctcttcc
agaaaatctctcacaacagtggcagattttcaggaaaatatatacaaagtagatatgact
ggtgcaaccatcagttctgcatcaagcatttcattgcttcaccattattgttccaagctt
ccacgcgacgagtatttctgccccaagccgcagttctattactttgatgacatagatgga
actatttgcaaattaattttaccttcaaacgctgcaatgcatcaaattgtcagtgctcct
caatcttctatagaagcagctaagaaagatgcttgtttaagagcctgcaagagcttgcat
gaacttggagcactcactgattatcttttgcctgatcaagcagacgaagatgaagacctg
gtccccgatttttctgacttggaatgctgtgaaggcgaagatgcacgggaagagctccat
gagatgattgttcctgcttcccttaaagaaccatggactgagacagagaatcctgtttgc
cttaactcatactacataagattttttcccttccctaatgatagggtgtataagaagttt
ggcctatttctgaaagcacctcttccccaagaggctgagagaatgaaacttgatctcaac
ttggctcgaggtagatctgtgaagacagagcttattccgtcaggagctactagttttgag
aacaatgagcagatacaactagcagagaaattccagagaatgttcctcaagatcattctt
gaccgctctgagttcatttcagaatttgtgtctttggaaaaaaaggattttgtcgactca
gcttctaagttttacctattgcttcctgtcaatttgtttgggcataataaaatctctgtg
gactgggagcttgtcagaagatgcttgtcatcaccaatttttggaacttcagtatgtaca
agcaataataagatgtctaaattcgaagagcagttgcaacttgccaatggttccaaaagc
gtacatgatgttgccaatagtttggtatatgttccatgcaaggatgcatttttcttcata
tccgatgttgttaaagacaaaaatgcatacagcatttataaagattctaaaaaccacgtc
gaacactactatgatatttcctctgtccatcttttataccctgatcaaccacttataaaa
gcaaagcagctcttctgtttggaaaacttactacggaagaaaggctattcagagttgcgt
gataaagaggagcactttgttgaactacctcctgaaatttgccagctcaagataattggg
ttttccaaagatattgggagctcattatcattgttaccatcaatcatgcatcgccttgaa
agcttacttgtcgctattgaactgaagggctgtctatctgcttctttccctgagggaagg
gaggtagcaatagatcatgttcttgaagcactcactacagagaactgccatgagtccttt
tctcttgaaaggcttgaagtgcttggtgacgcatttctcaagtttgcagttgggagacat
ctttttcttttgcacgatgcctttgacgaaggacagttaactagaaagcgctcaaacgct
gtgaacaattccaatctgtacatggtagcaatcagaaacaatttacaggcatatatacgt
gatcaatcatttgaacccaaccacttctatgtagtaggccgtccgtgtcctgtaacctgt
aacaagcaaacagaaaaaaaaatacatggtctatgtggtagcgggacagatggtgcaaag
actgaagttaggtgtagcaaatgtcatcactggttgcgtaagaaaacaattgctgatata
gttgaagcccttgttggtgcttttgtagtggacagtggcttcaaagcagcaattgcattt
ctaaaatggattggtatccatacagatttcaaagaaccacaactaaaaagtatctgctct
gcaagcaaagtctttatgccacttgctgatgaaatagatgttcttggcattgaacattta
ttaggttattctttcatccataagggtttgctcattcaggcattcatacatccatcttat
aacaggcatggagggggttgctatcagagattggagtttcttggagatgctgtccttgat
tatttgatcacatcttatctgtactctgtgtacccaaaactgaagcctggccagttgact
gatctgagatcaatttctgtaaacaacaatacctttgcagttgttgcagtacgtcaaggc
ttccacagtcatatactttgtgattctagcgacctccgtgagtcaattactagatatgtc
aatttcattggcagaccagattctatgaaaaagctgggtgaagagccatcttgtccgaag
gccctcggcgacttggtggagtcttgtatgggtgcaatcctacttgacacagggtttgac
ttgaaccgtgcttggcaaattatactctccttcttaaagcccgtcatgagctttaccagg
ttgcagcttaatccgacaagggaactctatgaactttgtcagtcttttggctggaattta
aagttcctgccgtcaaaaaaagatagcaaatttctagttgaggccagggtaaatggggag
aatgtttctgcagctgcttctgctctcaatattaataaaaaatctgctcaaagaatggct
gcacagaaagtatgctcaagcttgaaggctcaaggctataggcccaagtctaaatcactg
gaacaagtgctgaaaacagctattaagatggaagctaaactgataggatatgatgaaaca
ccctgtgttcttactactagttgtgatgacttggataagcatgaaacgtctgaaagtgat
tgtgacttaaaagtattccctgttaatgagaaacttgcaagaagttgcaatttcaagttt
aagtctacgagaaagttgttgtccccagaggcatctgtacaatgcaattctgaccagacc
atcatgagtaatggctctaaggaagattcaaaagctacaggtggttcaaaaactgaatcg
gcaaaatcacgtttgcatgaaatttgtgctgccaactgctggaaacctcctttatttgaa
tgttgcaaggaaacaggaccaagtcacttgaaagagtttactttccgggtggtggtagag
atcgaagaaacatcaagagttgtagagtcttatggagaagctcaggcgaaaaagaaagat
gcagctgagcatgcagcagaaggggctctttggttcttgaagcaggaaggatatctgctc
gacaactga
DBGET
integrated database retrieval system
