Solanum stenotomum: 125875947
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Entry
125875947 CDS
T08385
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 1-like
KO
K14807
ATP-dependent RNA helicase DDX51/DBP6 [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sstn03009
]
125875947
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125875947
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
Pre-60S particles
Helicases
125875947
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
PRK
MC5
Motif
Other DBs
NCBI-GeneID:
125875947
NCBI-ProteinID:
XP_049412979
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Position
9:complement(54872136..54886405)
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AA seq
513 aa
AA seq
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MEEDKGLKKEKKNIPVLPWMRNPVDITTFDQCSVDLLPFIDPRLVAALKNMSITSLFPMQ
LAVWQETIGPGSFERDLCINSPTGSGKTIAYALPIVQMLSTRAVKCLRALVVLPTRDLAL
QVKEVFSALAPAVGLSVGLAVGQSSISDEISELIKKPNVEYGICYDPEEFSYELQSAVDI
LVATPGRLMDHINNTDGFTLEHLSYLVVDETDRLLREAYQSWLPTVIQLTSSSVDGNFPS
AADLLPCTYGSLKTIRRMGTERGFKGKAYPRLAKMVLSATLTQDPSKLAQLDLHHPLLLT
TGERRYKLPEELKSFKVLCQSKLKPLYLVSLLQSLQGEKSIIFTSSVESTHRLCTLLKFF
DNLQIEFKEYSRLQRQSVRSKTLRAFRSGQVQVLISSDAMTRGMDVEGVRNVINYDMPAY
IKTFIHRAGRTARAGLSGCCFMLMHKDEIKRFKKMLQKADCNSCPTYSASSEVIESLRSV
YTSALEKLRENVESEKFKKSKIRLKSSNVRKEK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagataaggggttgaagaaagagaagaaaaacatccctgtactgccatggatg
agaaacccagttgatattactacctttgatcaatgctctgtagatcttttgccttttatt
gatcccaggttagtggcggctttgaagaatatgagcatcacttcactctttcccatgcaa
cttgctgtctggcaagagacgattggacctggctcttttgaacgagacctttgtataaat
tcacctacagggagcgggaaaactattgcttatgccttaccaattgttcagatgctgtct
acacgtgctgttaaatgtcttcgtgcattagtggtcttgcctactagagaccttgcattg
caggtcaaagaggtcttctctgctcttgcacctgcagtaggtctgtctgtcggcttggca
gtaggtcagtcatcaatttcagatgaaatctctgagctcatcaagaaacccaatgttgag
tatggcatatgttatgatcctgaagaattctcatacgagttacaaagtgcagtagacata
ttagtggcaactcctggaagactgatggaccacatcaataacactgatggttttacgctt
gagcatctatcatatcttgttgttgatgaaacagataggttattaagggaagcttatcag
tcctggcttcctaccgtcattcagttgaccagctcttctgttgatgggaacttcccttct
gctgctgatcttcttccttgcacttatggttcattgaagacaatcagaagaatgggcact
gaaagagggttcaagggaaaagcctatccaaggctggcaaagatggttttatcagccaca
ctaacacaagacccaagtaaacttgctcagcttgatttgcatcatcctcttcttttgacg
actggagaaagacgttacaagcttcctgaagaactcaaatcatttaaagtgctatgtcaa
tcgaagcttaagccactctatctagtttcccttcttcaaagcctgcaaggggagaaatca
attattttcacgtcatccgtggagtccactcatagattatgcaccttgctcaagtttttc
gacaatttgcaaattgagttcaaggagtattctcgtcttcaacggcaatctgtaagaagc
aagacgttgagggctttccggtcagggcaagtgcaagtgcttatttcctctgatgctatg
actcgtggaatggatgttgaaggagtgagaaatgtcataaactatgatatgcctgcatat
ataaaaacatttattcatcgggcaggcagaactgcaagagcgggcctaagtggatgttgc
tttatgttaatgcataaagatgagatcaagcgcttcaagaagatgctacaaaaagctgac
tgtaactcttgccctacctattctgcttcttctgaagtgatagagtcacttcgctctgtg
tacacctcagctttggagaaacttagagagaatgttgaatcagaaaagtttaagaaaagc
aagattaggttgaaatcttcaaatgtgagaaaggagaagtga
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