Solanum stenotomum: 125875976
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Entry
125875976 CDS
T08385
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125875976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125875976
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
125875976
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
125875976
NCBI-ProteinID:
XP_049413019
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All DBs
Position
9:18571937..18575049
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AA seq
202 aa
AA seq
DB search
MADGNVDVLDIYPLNHYYFGSKESLPLKEEETLDHRIQRLKFNYNTHGIRTCVQAVLLVD
LFKHPHLLLLQVRHSIYKLPGGRLRPGESEIECLRRKLSSKLSMSEEDDRWEVGECLGMW
WRPDFETLIYPFLPPNIKRPKECTKLFLVRLPKSCKFIVPKNLKLIAVPLYQVHENFKTY
GPIIAGVPQLLSKFSYNTPDTD
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atggcagatggaaatgtggatgttttggatatttacccactgaatcattactattttggt
tcaaaagagtcacttccattaaaggaagaggagaccttggatcatcgcattcaacgcttg
aaattcaactacaatactcatggaatcagaacttgtgtacaagctgtgcttttggttgat
ttgttcaaacatccacatctattattattgcaagtacggcattccatatacaaacttcca
ggtggtcgtcttaggcctggtgaatcagaaatcgaatgtcttagacgtaaactctcaagt
aaactatccatgagcgaagaagatgacagatgggaggtcggtgaatgccttgggatgtgg
tggagacctgactttgaaacattgatttacccgtttttgccacctaatataaaaaggcca
aaggagtgcacaaaactctttctagtgaggttgcctaaaagttgcaaattcattgtaccg
aagaacctcaagcttattgctgttccattgtaccaagttcatgaaaatttcaagacatat
gggccaataatagccggagttccacaactgttatcgaagttctcgtacaatacacccgat
actgactga
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