Solanum stenotomum: 125876213
Help
Entry
125876213 CDS
T08385
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125876213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125876213
03012 Translation factors [BR:
sstn03012
]
125876213
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125876213
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125876213
Translation factors [BR:
sstn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125876213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
NACHT
SR-25
AAA_19
Motif
Other DBs
NCBI-GeneID:
125876213
NCBI-ProteinID:
XP_049413286
LinkDB
All DBs
Position
1:complement(96940343..96950020)
Genome browser
AA seq
1033 aa
AA seq
DB search
MSVRLLNHPHSSALLRFHFRNSLRSSLQRSYSFSHSAMAYRPNYRGGRRGGGGGGGGRGG
GGRGGGGRGGGGRGGEQRWWDPVWRAERLRQQAAEMEVMNENEWWGKMEQFKRGGEQEMV
IRRNFSRDDQQKLSDMAYQLELYFHAYNKGKALVASKVPLPSYRADLDERHGSTQKEIRM
STEIEERVGNLLSSSQDTVSAGTSSSTSGNSAKLSSKAVETAKPKLTIEDDTATKRLNVQ
LKQKQEKTRESEKVKAMISFREKLPAFKVKSEFMEAVANNQVLVVSGETGCGKTTQLPQF
ILEEEISSLRGVDCNIICTQPRRISAISVAARICSERGESLGDTVGYQIRLEAKRSAQTR
LLFCTTGVLLRRLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS
ATINAELFSKYFRDAPTIHIPGLTYPVAELFLEDVLEKTRYLIKSEADNFQGNSRRRMMQ
QDSKRDPLTDLFEDVDIGSHYKGYSMTTRQSLEAWSGSQLDLGLVEASIEYICRCEGEGA
ILVFLSGWDEISKLLDKIKANNFLGDTRKFLVLPLHGSMPTVNQREIFDRPPANTRKIVL
ATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPG
VCYRLYPKLIHDAMAQYQLPEILRTPLQELCLHIKSLQFGAIESFLAKALQPPDALSVHN
AIELLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHRD
PFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKRYGKERTFCWENFLSPVTL
QMMEDMRNQFVDLLSDIGFVDKSRGAKACNEYSNDLEMVCAILCAGLYPNVVQCKRRGKR
TAFYTKEVGKVDIHPASVNASVHLFPLPYLVYSEKVKTSSIYIRDSTNISDYSLLMFGGN
LTPSKSGDGIEMLGGYLHFSASKSVLDLIKKLRVELDKILKRKIEEPHFDVSVEGKGVVA
AVVELLHSQDIRY
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgcgccttctaaaccacccacactcctccgctcttctccgttttcacttccgt
aactctcttcgttcatcactccaaaggagttactctttttcccattccgctatggcttat
cgtccgaactaccgaggcggtcgccgtggaggcggtggcggaggaggaggacgcggcggt
ggaggccgtggtggcggtggtcgtggaggaggaggacgtggtggtgaacagagatggtgg
gatcctgtatggcgtgctgaacgacttaggcaacaggcagctgagatggaggtgatgaat
gagaatgagtggtgggggaagatggagcagtttaagagaggaggcgagcaggaaatggtt
ataaggcggaattttagtagggatgaccaacagaagttgtctgatatggcgtatcaatta
gaactttacttccatgcttataacaagggaaaggcacttgttgcaagcaaagtcccactg
ccaagctatcgtgctgatcttgatgagcgtcatggatctacacagaaagagattaggatg
tctacagagattgaggaaagagttggaaatctattgagtagttcacaggacacagtatct
gctgggacttcctcttcaacatctggtaattctgccaaattatcatccaaagctgtagaa
acagccaaacccaagttgactatagaggatgatactgccaccaaaagacttaatgtgcaa
cttaaacagaaacaggaaaagacgagggaaagtgaaaaagtcaaggcaatgatctcattc
agagaaaaacttccagcatttaaagtgaaatctgaatttatggaagctgttgcaaataat
caggtcttggtagtttctggagagactggttgtggaaagacaacccagctccctcaattc
attctagaagaggagatatcatcccttcgtggtgttgattgtaacattatatgcactcag
cctcgccgtatatctgcaatatcagttgctgctcgaatatgctctgaaagaggagagagc
cttggtgatactgttggctaccagattcggctggaagcaaagcgctctgctcaaacacgg
ttgctattttgcacaacaggagtgttactgcggcggctggttcaggaccctgatttgact
ggtgttagccatctgcttgttgatgaaatccatgaaagaggcatgaatgaagacttcctc
ttgataattttacgtgatctccttcctcgacgacctgatttgcgtctcattctgatgagt
gctactattaatgctgagttgttctccaaatacttcagagatgcacccacgattcatata
ccgggtttgacatatccagtggcagagctgtttcttgaagacgtgttggagaagactcgt
taccttataaaatccgaagcagacaatttccaaggaaactcaaggagaaggatgatgcag
caagattctaaaagagatcctctgactgatctttttgaggatgtggacattggttcacat
tacaaaggctacagcatgactacaagacaatctctggaagcatggtctggttcacagctt
gatttgggtcttgtggaagcatcaattgaatatatttgtcgctgtgaaggtgaaggtgca
attcttgtgttcctatctggttgggatgagatttctaagctacttgataaaattaaggct
aacaacttccttggagacaccaggaagtttttagtcctccctcttcacggttcaatgcca
acagtaaatcaacgagaaatatttgatcgtccacctgctaacacgaggaaaattgtgctt
gccaccaacatagctgagagcagtataactatagatgatgtcgtgtatgtcatagactgt
gggaaggcgaaagagactagctatgatgcactgaacaagctagcttgtttattaccatca
tggatttcaaaggcctcagcacatcagaggcgcggtcgtgcgggccgtgtacaacctgga
gtttgttataggttgtatccgaaactgatacatgatgctatggcacaatatcaactacct
gagattcttcgaacaccattacaagagctttgtctccatattaagagtttgcagtttggc
gccattgaatcctttttggccaaggcacttcaacctccggatgctctctccgtccacaat
gctattgaacttctcaaaactattggagctctggatgatacagaagaacttactccactt
ggccgccatctttgcactctaccgctggatccaaatattggaaagatgcttctgatgggg
tccatcttccaatgtctgaaccctgcactgactattgctgctgctctggcacaccgtgat
ccatttgtcctgccaataaacaggaaagaggaagcagatgctgctaaaagatcctttgct
ggtgattcttgcagtgatcatattgcacttcttaaagcatttgaaggatggaaggatgct
aaacgttatggaaaagaaagaaccttctgttgggaaaatttcttatctcctgtaaccttg
cagatgatggaagacatgagaaatcagttcgttgacctactgtcagatattggttttgtg
gataaatcacgaggagctaaggcatgcaatgaatatagcaatgatttagagatggtatgt
gccatcctttgtgcgggcctctacccaaatgtcgtgcagtgtaaaagaagaggaaagcgt
acagcattttacacgaaggaagttggaaaagttgatatccacccagcatctgttaacgct
agtgttcatcttttccctcttccgtacttagtttacagtgagaaagtcaagacctcaagc
atttatatcagagattcaacgaacatatccgattattctctccttatgtttgggggtaat
ctcactccaagcaaaagtggagacggcattgaaatgcttggaggctatcttcacttttcc
gcgtcaaaaagtgtgttggatttaataaagaaactacgagtggaactggataaaatatta
aaaaggaaaatcgaagagccccactttgacgtctcagtcgaggggaagggtgtagttgct
gctgtggttgagttgcttcatagtcaagacatacggtactga
DBGET
integrated database retrieval system
