Solanum stenotomum: 125876427
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Entry
125876427 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125876427
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125876427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125876427
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125876427
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
125876427
NCBI-ProteinID:
XP_049413567
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Position
9:8534665..8547323
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AA seq
386 aa
AA seq
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MVSILFEMMVRPAILSSVEAIRRQEVRLTSLFFSGTHEEEVSDVVTTDFSMENLPESPFS
ESILGSSSPSPSQKNPNDLGALTPNQLVLLIHDASLREEVMHHLYEKKDSCKNLALLLWN
NFNTVYMLLLEVTSVYSKFSPSMLSMKEATQVCCALALFQVLANNPETRRGLIKAKIPCY
FYPFLKPFGDDEHLEHVRITTLGVLGDLTKFDDPNGSHALHFFLESEVVPLCLKCMDVCD
EMSRKVATLIVMNILTQERGLTYCCATRERFFAIVQVLRRVVEKLSPKPCLLHLEYVIQC
YVCLSKIFRSIGPCDAFIRQIPPQLFDNTFRRTLLHDHEASWMLQVLHLNIYGCLYFPPI
EERKKIAKKAASSSASSSKGKGKGKK
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggtatccatcctattcgagatgatggtcaggccagcaatacttagctcagttgaggca
attcgtaggcaggaggtcagactcacttctctatttttttcgggcacacatgaggaagaa
gtgtctgatgtagtgaccacagacttttcaatggagaatctaccagagtcaccattttct
gaatcaatattgggatcatcgtcaccatcgccatcacagaaaaatcctaatgacttgggt
gctctcactccaaatcagttggtgctattgatccatgatgctagtcttcgtgaagaggtc
atgcatcacctctacgagaagaaagattcatgcaaaaatctagctctgctgctgtggaac
aacttcaatacagtttacatgcttttgctggaagtcacatcagtgtatagcaagttttca
ccctcaatgctatctatgaaggaagcaactcaagtttgttgtgctcttgctttgtttcag
gttttggctaataacccagaaacaagaaggggcctcataaaagctaaaataccatgttat
ttctatccatttctcaagccttttggagatgatgagcatttggagcatgtgaggatcact
accttgggtgttctcggtgacctgacaaagtttgatgatccaaatggatcacatgccctt
catttcttcttggaatcggaagtggttcctttgtgcctgaagtgcatggatgtatgtgat
gaaatgtcacggaaggttgcaactctcatagttatgaatattctgacgcaagagagggga
ctgacctattgttgtgctacgcgtgaacgcttcttcgcgatagtacaggtcttgagacga
gtggttgagaaactttctccaaaaccttgtttgctgcatctagaatatgtgatacagtgt
tatgtatgtctgtcaaaaatatttaggtccatcgggccatgtgatgcattcataagacaa
attcctcctcagctatttgacaacacctttaggcgcactcttcttcatgaccacgaagct
tcgtggatgttgcaggtgctacatctcaatatttatggatgtctatattttccgccaatt
gaagagagaaaaaagattgcaaagaaggctgcatcaagttctgcatcaagttcaaagggc
aagggaaagggaaagaagtga
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