Solanum stenotomum: 125876682
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Entry
125876682 CDS
T08385
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
sstn
Solanum stenotomum
Pathway
sstn03082
ATP-dependent chromatin remodeling
sstn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125876682
03083 Polycomb repressive complex
125876682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sstn03036
]
125876682
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
125876682
Histone modification proteins
HAT complexes
HATB complex
125876682
HDAC complexes
Sin3A-HDAC complex
125876682
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
125876682
PRC2.2
125876682
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
125876682
Heterochromatin formation proteins
Other heterochromatin formation proteins
125876682
Chromatin remodeling factors
NuRD complex
125876682
NuRF complex
125876682
NuRF complex (fruit fly)
125876682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
Beta-prop_DCAF12
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_C
Beta-prop_HPS5
eIF2A
WD40_RFWD3
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
125876682
NCBI-ProteinID:
XP_049413860
LinkDB
All DBs
Position
9:complement(20207635..21312541)
Genome browser
AA seq
495 aa
AA seq
DB search
METPSSQPKRRGRPKGSAAKSKDEREKEPHSSGKMRGSASKRAAAVDEEYVQWKSLVAVL
YDWFANHNLIWPSLSCRWGPVVELGRYKNRQRLYLSEQTDKSVPNTLIIANCDVVKPRVA
AENHIANFNEEARSPFVRKYKTIIHPGEVNRIRELPQNKNIVATHTDGPEVLIWDIEAQP
NKHAVYGAAASRPDLVLSGHQDNAEFALALSPMEPFVLSGGKDKTVVLWSIQDHISTLAA
NAPKSAGSGGSIIKSADNPSIGPRGIFHGHADTVEDVQFCPSSSQEFCSVGDDSCLILWD
ARVGNNPAVKVEKAHDADLHCVDWNPHNDNLIITGSADNSVRLFDRRNLTSDGVGSPVHM
FEHHTAAVLCVQWCPDRSSVFGSCAEDGLLNIWDYEKVGAAKDSDIESDEDEEESPPGLF
FQHAGHRDKIVDFHWNACDPWTIVSVSDDAETSGGGGTLQIWRMIDMLYRPKDEVLAEMQ
HFKDHVGKCTPKSKG
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgccttcttcccagcccaaaaggcgtggcaggccaaagggttctgctgccaaa
tccaaagacgaaagagaaaaggaacctcacagttccggcaagatgagaggtagtgctagc
aagagagctgctgctgtggacgaggagtatgttcagtggaagtcactcgtagctgtcctc
tatgactggttcgctaatcacaacctcatttggccttcgctctcttgcaggtggggtcca
gtagttgagctgggtcgttataaaaaccgccagcgactctacctttctgaacagacggat
aagtcagtgcctaatactttgatcatcgccaattgtgatgtggttaagcccagggttgca
gcagaaaatcacattgcaaacttcaatgaagaggcacgctcgccatttgtgaggaagtac
aaaaccataatacatccgggagaggttaacagaatcagagaactcccgcagaacaaaaac
atagtggcaacccatactgatggtcctgaagttctcatttgggacattgaagctcagcct
aacaagcatgctgtctatggtgctgctgcttcgcgtccagatctggtattaagtggacat
caggacaatgcagaatttgctctggctctgtcccccatggaaccctttgtcctctctgga
ggaaaggacaaaactgttgtcttgtggagcattcaagatcacatttcaacattggcagca
aatgcacccaagtctgctggatcaggtggctctataattaagtctgctgataatccttct
attggaccacgtggtatcttccatggccatgcggatactgttgaagatgttcagttttgt
ccttcaagttcccaggaattctgtagtgttggtgatgattcatgcctcatattatgggat
gcccgagttggtaacaatcctgctgtaaaggttgagaaagcgcatgatgctgatcttcat
tgcgtcgactggaatcctcacaatgacaatcttatcataactgggtccgctgataattcg
gtacgcttatttgaccggcgaaatttgacttcggatggggttggatcaccagtacacatg
tttgaacatcacacagctgcagttctctgtgttcagtggtgtccggataggtcttctgtg
tttgggagctgtgctgaggatggtctcttaaatatttgggactatgagaaggttggtgca
gcaaaagattctgatatcgagtctgatgaagatgaagaggagtctccaccaggcttgttt
ttccagcatgctggccacagggataaaattgtggactttcactggaatgcttgtgatcca
tggactattgttagtgtatctgatgatgcggagacctctggtggaggcggcacattacag
atatggcgtatgattgatatgttgtaccggccgaaggatgaagttttggctgagatgcaa
catttcaaggaccatgtgggcaagtgtacccctaagtcgaaaggctga
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