Solanum stenotomum: 125876926
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Entry
125876926 CDS
T08385
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125876926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125876926
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
U1 related factors
125876926
Complex B
125876926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
TetR_C_11
Motif
Other DBs
NCBI-GeneID:
125876926
NCBI-ProteinID:
XP_049414171
LinkDB
All DBs
Position
9:complement(38859193..39927279)
Genome browser
AA seq
1031 aa
AA seq
DB search
MASNPPPSGPQPLWPPSVGSTPPQGFGSFPMQFRPALSTQQGQHFAPPISASPQYRPVGQ
TPNAGMPPGQGQIPQFSQTMQQFPPRPGQPGHGTPSSQAIQMSYIQSSIPQPQQVNPPLN
SHMPGVSGAGNPFSSSYTVQSSSQMHGPTFPAGGQTWLSSRSQTTPVAAPTPPSSHQLSA
VAPAVPASTASQQTASDWQEYEAADGRRYYYNKNTKQSSWEKPLELMTPLERADASTVWK
EFTTADGRKYYYNKETKQSKWTIPDELKLARELAENAAGQVVQTGTSTNSGVQVSEAVTP
AEQPSAVTPVSSTPSSTVSGVASSPVPVTPAVSDVNTPPLVVSGSSAIPSVSLAVTSSGG
VSSPAVSGSTESDALANAYQTQMSAIENLSPQVASSLSGASSQDIEEAKKGMAVAGKINV
VPAEEKSADEEPFLYATKQEAKNAFKALLESANVESDWTWEQTMRVIINDKRYGALKTLG
ERKQAFNEYLMQRKKQEAEERRLRQRKAKEEFTKMLEESKELTSSTRWSKAVTMFEDDER
FQAVEREADREDLFRNYLVDLQKKERSKAQEEYRRNRLEYKQFLETCGFIKVDTQWRKVQ
DLLEDDERCSRLEKLDRLEIFQEYIRDLEKEDEEQRKLQKEQLRRAERKNRDAFRKMIEE
HIAAGMLTAKTSWRDYCQMVKESVAYQAVASNTSGSTPKDLFEDVTEELEKQYHEDKIRV
KDVVKSEKITISSTWTFEDFKVAIFEGIGSPSIHDVNLQLIFEDLIERAKEKEEKEAKKR
QRLAKDFTNKLSSIKEITDSSSWEESKELVEDSSEFRAIGEETISRAVFEEYVAWLQEKA
KEKEHKREEEKVKKEKEKDEKEKRKDKERREKEKEKEKEREKEKERGKERSKKDEPDSMT
MDVTDIYEHKEERKREKDKERKHRKRHHSSNDELTSEKDEKEESERDKERKHRKHHQSSN
DEVTSDRDEKEEFRKSHRHSSDRKKSKKHAHSPESDGESRHKRHRRDRDGSRRNGGHEEL
EDGELGEDGES
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatcctccaccatctggtccacagcctctttggcctccttcagttggatcc
acaccacctcaaggttttggttcatttcctatgcaatttcgacctgctctatcaacacag
caaggccagcactttgctccaccaatttcagcctctccacaatatcgccctgttggacaa
acaccaaatgctggaatgcctcctggtcaaggtcaaataccccagttttctcaaacaatg
cagcagtttcccccaagacctggccagcccggtcatggaacaccgtcatctcaggcaatt
cagatgtcatatatccaatcaagtattccacaacctcaacaagtcaatccccctttgaat
agtcacatgcctggtgttagtggtgctggaaatccattctcatcatcatatacagttcaa
tcttcatcccaaatgcatggtcctactttccctgccgggggacagacttggttgtcatct
agaagtcaaaccacaccagtggctgccccgactcccccgagtagtcaccaattgtcagct
gtagctccagcagttccggcgagcacagcttcacagcagactgcatctgactggcaagag
tatgaagctgctgatgggagacgatattattacaataagaatacaaagcaatctagctgg
gagaagcctttggagctgatgacacctttagagagagctgatgcttcgactgtatggaaa
gaattcacaactgccgatggtcggaagtattactacaacaaagaaacaaagcagtctaag
tggacaattcctgatgaactaaagttggctcgtgaactcgctgaaaacgctgctggtcaa
gtagttcagactggaacaagcacaaattctggtgtgcaagtcagtgaagctgtgacccca
gcagaacaaccatctgctgtcaccccggttagctccaccccttcttcaacggtttctgga
gttgcttcaagccctgttccagttacgcctgctgtttctgatgttaatactccacctctg
gtggtttctggatcatcagccattccttctgtgagccttgctgtgacaagttcaggtggt
gtctcttcacctgctgtttcagggagtacagaatctgatgctctagctaatgcctatcag
acacaaatgagtgccattgaaaatttatctcctcaagttgctagttctttaagtggagct
tctagtcaggatattgaggaggcaaagaaaggcatggctgttgctgggaagattaatgtg
gtacctgcagaagagaaatcagcagatgaagaaccttttctatatgccaccaagcaggag
gctaaaaatgcattcaaagctctactagagtctgctaatgttgaatctgattggacatgg
gagcagacaatgcgagttataatcaatgataaacgatacggggctctaaaaactcttggt
gagcggaaacaagcatttaatgagtacttgatgcaaaggaagaaacaggaggctgaggag
aggcgccttagacaaagaaaggcaaaagaggaattcacaaagatgttagaggagtccaag
gaactcacttcatctacaagatggagtaaggcagttacaatgtttgaggatgatgaacgg
ttccaggctgttgaacgagaggctgatcgtgaagatctcttcaggaactacttggtggat
cttcagaaaaaggagaggtcaaaggctcaagaagagtatcgacggaatagattggagtac
aaacagtttttggagacttgtggctttatcaaggtagatacacagtggcgcaaagtccaa
gatcttttggaagatgatgaaagatgttcacgccttgaaaaacttgaccgcttagagatt
ttccaggaatacatccgtgacttggagaaggaggacgaagaacagagaaaattgcaaaag
gagcaactgaggcgtgcagagcgcaagaaccgggatgcattccgaaagatgatagaggag
catattgctgcaggcatgcttactgcaaaaacatcttggcgcgattattgtcagatggtt
aaggagtccgtggcttatcaggctgttgcatcaaatacttctggttcaacaccaaaggat
ttgtttgaagacgtcactgaagagttggaaaaacagtatcatgaagacaagattcgtgta
aaagatgtagttaagtcagaaaagatcacgatctcatcaacatggacatttgaagacttt
aaagttgcaatttttgagggaattggttccccatccattcacgatgttaatctacagctt
atttttgaggatctaattgagagagcaaaggaaaaggaagagaaagaagctaaaaagcgt
caaaggcttgcaaaagattttaccaacaagctcagttccatcaaggaaataactgattcc
tctagttgggaggagagcaaagaacttgtggaggacagttcagagttcagagctattggt
gaagagacaatctcaagggcagtctttgaggaatatgttgcatggttgcaggaaaaagca
aaggaaaaggaacacaaacgagaggaggaaaaggtcaaaaaagagaaagaaaaagatgag
aaagagaagagaaaggataaggagagaagggagaaagaaaaagagaaggaaaaagagcgt
gagaaggagaaagaaaggggaaaagaacgatcaaaaaaagatgagccagatagcatgact
atggatgtaacagacatctatgagcacaaagaagagagaaagagagaaaaagacaaagaa
aggaaacatcggaagcgacaccatagctctaacgacgagctgacttctgaaaaggatgag
aaagaggaatctgaaagagacaaagaaaggaagcaccggaagcatcaccagagctctaac
gatgaggtgacatccgacagggacgagaaagaggaatttagaaagtcccaccgacatagt
agtgatcgtaaaaagtcaaagaagcatgcacattcacctgaatctgatggtgaaagtcgg
cataaaagacacagaagagatagggatggatcacgtcgaaatggtgggcatgaagagcta
gaagatggtgagcttggtgaagatggagaaagttga
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