Solanum stenotomum: 125876996
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Entry
125876996 CDS
T08385
Name
(RefSeq) autophagy-related protein 18b
KO
K17908
autophagy-related protein 18
Organism
sstn
Solanum stenotomum
Pathway
sstn04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
125876996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sstn04131
]
125876996
03029 Mitochondrial biogenesis [BR:
sstn03029
]
125876996
Membrane trafficking [BR:
sstn04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
125876996
Mitochondrial biogenesis [BR:
sstn03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
125876996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
BCAS3_WD40
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
125876996
NCBI-ProteinID:
XP_049414257
LinkDB
All DBs
Position
9:complement(53212560..53218920)
Genome browser
AA seq
365 aa
AA seq
DB search
MANQPSSYPILCASFNQDNSCFAIGTREGFKIFDCNTGRLLYERVAGAFIIVEMLFSSSL
LAIVGAGEQPSLSPRRLCLFNTVTGVALEELNFLTSILAVRMNKKRLIVILQEKTFIYDI
NSLKILDTIDTVLNPKGLCAFSPSLDGSFLALPASTTKGSLLVYNVSDLRLHCEIDAHRS
PLAVLSLSSGGTHIATASEQGTMIRIHLVSDATKLYSFRRGSYSSNIFSLSFAPAAELPD
ILLATSSSGSVHVFSLGSPSNQRSSGLLGSIKVPHTINDALDPAQHCILHHAVPAGVRSN
TLIRKIEKFDETATPEHVVLRATIPMITYGGYFLEYVYNVNHQNKSSWTLEREFNLLTAE
TSSLP
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcaaccctcttcttacccaattctttgtgcttccttcaatcaagacaacagt
tgctttgctattggaacaagggaagggttcaaaatttttgattgtaatactggaaggctc
ctttatgaaagagttgctggagcatttattatagtagaaatgttgtttagctcaagcctt
ctcgcaattgttggagctggtgaacagccgtctttgtcacctcgaagactgtgtttgttt
aatactgtgactggagtagctcttgaggaacttaacttcttaacttcaatccttgctgtt
cgcatgaataagaaaagattgattgtcatattgcaggagaagacatttatttatgatata
aatagtcttaagatactggacacaattgatacggtgctgaatccaaaaggactttgtgca
ttttcacccagcttggatggttcatttttggcccttccagcaagtacaaccaaaggatca
ttgttagtctataatgtttctgacctccgtttgcactgtgagatagatgctcatcgctca
ccattggctgtcttgagtctttcatcaggtggaactcacattgcaacagcatctgaacaa
gggaccatgatcagaattcatcttgtttcagatgcaactaagttgtatagcttcaggaga
ggatcatactcttcaaatatcttttctttgtcattcgcgccagcggcagaacttccagat
attcttcttgcgactagttcttctggttctgttcatgttttctctttgggttcaccctca
aatcaaaggtcttctggtcttctaggatcaataaaagtacctcatactattaacgatgcc
ctggatcctgctcagcattgcatactgcatcatgctgtcccggctggcgtgagaagtaat
acgttgatccgcaaaatagagaaatttgacgagacagcaacacctgaacatgtggtacta
cgagctactatacctatgatcacctatggcggatacttcctggagtacgtctacaacgtc
aaccatcagaacaagtcttcgtggaccttagaacgagaattcaatcttttaacagcagaa
acatcctcattaccatga
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