Solanum stenotomum: 125877095
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Entry
125877095 CDS
T08385
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125877095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125877095
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125877095
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125877095
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125877095
U7-dependent histone pre-mRNA processing factors
125877095
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
125877095
NCBI-ProteinID:
XP_049414369
LinkDB
All DBs
Position
9:complement(9076252..9085161)
Genome browser
AA seq
695 aa
AA seq
DB search
MASTGQPQSSLKRPNPGVNRDGDKLVITPLGAGNEVGRSCVFMTFKGKTIMFDCGIHPGY
SGMSALPYFDEIDPSSIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL
SDYVKVSKVSVEDMLFDEHDILRSMEKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDVCIIESTYGVQLHMPRQIREKLFTDVIH
STLMQGGRVLIPAYALGRAQELLLILEEYWSNHPELANFPIYYASPLARRCMAVYQTYIN
AMNERIRNQFVSSNPFNFKHISSLNSIEDFIDNKPCVVMASPGSLQSGLSRQLFDKWCSD
KKNACVIPGYVVEGTLAKTIINEPKEVTLTNGLSAPLNMQVHYISFSAHADYAQTSTFLK
ELMPPNIILVHGASNEMDRLKQKLTSLFADGNTKIITPKNCQSVEMHFNSEKMAKTIGKL
AEKTPEAGEIVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFAVIQHRL
KQIYESVESSTDEEYGVPTLRVHERVMVKQESENHLSVHWTADPICDMVSDSVVALVLNA
SREMPKVSVESETPINEEEDAKKTEKIVHALLVSMFGNVKFGDDGKLVINFDGILAHLDK
QTGDVECENEALKERVKTAYWRIRSAVKPIPLSVS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcatctacgggacagccacagtcttctttgaagagacctaatcctggagttaataga
gacggagataaactggttatcactcctttaggggctggaaatgaagtgggacggtcctgt
gttttcatgacttttaaagggaaaacaatcatgtttgattgtggcattcatccaggttac
tcaggcatgtctgccttaccctattttgatgaaattgacccttcatctattgatgttctt
cttgttacccattttcacttggatcatgctgcatcccttccttattttctcgaaaagact
acatttaaagggcgtgttttcatgacacatgccacaaaggccatatacaagttgcttttg
tcagattatgttaaagttagcaaagtctctgttgaagatatgttgtttgatgaacatgac
attcttcgctccatggaaaaaattgaggttattgacttccatcagactatggaagtaaat
ggtattcgcttttggtgttatactgccggccatgtccttggtgctgccatgtttatggtt
gatattgctggtgttcgagttctctatacaggagactattcccgtgaagaagacaggcat
ctccgcgcagctgagatcccacaattttctccagatgtttgcattatagaatcaacttat
ggtgttcaactccatatgccccgtcagataagagagaagcttttcactgatgtcatacat
tcaacactgatgcaagggggtcgggtgctgattcctgcttacgccttgggacgtgcacag
gaacttctccttattctggaggaatattggtctaaccatcctgaactagctaacttcccc
atatattatgcttctccacttgcaagaaggtgcatggctgtctatcagacttacatcaat
gccatgaatgaaaggatccgcaatcaatttgtcagctcaaatcccttcaatttcaaacat
atatcttccctgaacagtattgaagattttatagacaacaagccatgtgtagtgatggca
agtccaggtagtcttcaaagtggtttgtcaaggcaactgttcgataaatggtgctctgac
aagaaaaatgcttgtgtcatacctgggtatgtagtggaagggaccttggcgaagactatc
atcaatgaaccgaaggaagtcactctcacaaatggcttgtctgctccacttaatatgcag
gttcattatatttcattctcagctcacgctgattatgctcagacaagtaccttcttgaaa
gaacttatgcctcccaacataattctagtccacggagcttctaatgagatggatagactc
aagcagaaacttacctccctctttgctgatgggaatactaaaattatcactcccaagaac
tgccagtcagttgaaatgcacttcaactctgagaaaatggcaaaaaccattggaaagctg
gctgaaaagacccctgaagcgggcgaaattgtcagtggtttacttgtgaaaaaaggtttc
acttaccagatcatggcacctgatgatctccatgtcttttctcagctatccactgcaaat
gtcacacagagaataactatcccctattcaggtgcttttgctgttatacaacacaggctt
aagcagatctatgaaagtgtagagtcctcaacagatgaagaatacggtgtaccaactttg
cgggtgcatgagcgagtgatggtgaagcaggagtcagagaatcatctctccgttcattgg
acagcagatccaatttgtgacatggtatctgactctgtcgtggcattggttctgaatgcc
agcagggagatgcctaaagtatcagttgaatcggaaactccgattaatgaggaagaagat
gcaaagaaaactgagaaaatagtccatgcactcctggtttctatgtttggtaatgtgaaa
tttggggacgatggtaagctggtaatcaattttgatgggattttggctcatctggacaaa
caaactggtgacgttgaatgtgaaaatgaagctctcaaggagagagttaagactgcatac
tggcgaatcagaagtgctgtgaaaccaataccgctttctgtatcttag
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