Solanum stenotomum: 125877957
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Entry
125877957 CDS
T08385
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sstn04131
]
125877957
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sstn04147
]
125877957
Membrane trafficking [BR:
sstn04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
125877957
Exosome [BR:
sstn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125877957
Exosomal proteins of bladder cancer cells
125877957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_SPT8
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
WD_LRWD1
Fis1_TPR_C
zf-CHCC
Aa-Ago_N
Zn_ribbon_3
Motif
Other DBs
NCBI-GeneID:
125877957
NCBI-ProteinID:
XP_049415206
LinkDB
All DBs
Position
9:26775057..26786270
Genome browser
AA seq
1219 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHTQRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDLLR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHPRQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILASHP
EMNLLAAGHDSGMIVFKLERERPAFSVSSDSLFYVKDRFLRVYEYSTQKDTQLIPIRRPG
SNNVNQGPRTLSYSPTENAVLICSDTDGGSYELYIVPKDSYGRGDTVQDAKRGTGGSPVF
VARNRFAVLEKSTNQVLVKNLKNEIVKKSLLPMATDAIFYAGTGNLLCRAEDRVVIFDLQ
QRIILGDLQTSFIRYVVWSPDMESVALISKHSIVIADKKLVHRCTFHETIRVKSGAWDDN
GVFIYTTLTHIKYCLPNGDCGIVKTLDVPVYITKIYGNTIFCLDRDGKNRPIIIDSTEYD
FKLCLLRKRYDQVMSMIRNSELCGQAMISYLQQKGFPEVALHFVKDERTRFNLALESGNI
EIALESAKKIDEKDHWYRLGVEALQQGNAGIVEYAYQKTKNFERLSFLYLITGNVEKLSK
MMKIAEVKNEVMGQFHDALYLGEVRERVKILENAGHLPLAYITATVHGLNDTAERLAEEL
GDNVPSLPKRKKASMLLPPTPILGGGDWPLLMVTKGIFEGGLDIAGRGGQEEYEEAADAD
WGESLYIGEVENLQNGVISMVLGDEEGQEGNDDEEGGWDLEDLDLPPDTDTPKTTSNARS
SVFVTPTPGMPVSQIWVQKSSLAAEHAAAGNFDTAMRLLSRQLGIRNFSPLKSLFIDLHV
GSHTHLLAFSSAPVISVAIERGWSESASPNVRGPPALIFSFAQLEEKLKASYKATTGGKF
SDALRLFLSILHTIPLIVVESRREVDEVKELIVIVKEYVLGLQMELKRKELKDNPIRQQE
LAAYFTHCNLQLPHLRLALQNAMSICYKAGNLSSAANFARRLLETNPTNESQARTARQVL
QAAEKNMRDVTQLNYDFRNPFTVCGATYVPIYRGQKDVTCPYCGTHFVLSQQGELCTVCD
LAVVGADASGLLCSASQIR
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagtttgaaaccaagagtaatagagtgaaaggtttgagttttcacacccaa
aggccatggatcttagccagtcttcatagtggggttattcagctatgggattaccgtatg
ggaactctcattgatcgatttgatgagcacgatggccctgttcgcggtgtccattttcac
aaatctcagcctctatttgtttctggaggagatgattacaaaattaaggtttggaactat
aagctgcatcggtgcttgtttaccctgcttggacatcttgattatattcgaactgttcaa
tttcaccacgaatatccatggattgttagtgcaagtgatgaccagacaattcggatatgg
aactggcagtctcgtacttgtatttctgtcttgactggtcacaatcattatgtaatgtgt
gcctcatttcatcccaaagaggacttggttgtctctgcttctttggatcagactgttcgt
gtctgggatattggtgccctaagaaagaaaaccgtttctcctgctgatgatctcttgcgg
ttgagtcagatgaatactgacttctttggtggagtggatgctgtggtgaagtatgtcttg
gagggtcatgatagaggggttaactgggcatcatttcatcctacactcccccttatagtt
tctggtgcagatgatcgccaagtgaaaatttggcggatgaatgatacaaaagcttgggag
gtggacacattgagaggacacatgaacaatgtttcatgtgtgttattccatccaaggcaa
gatattattgtttcaaattcagaggataagagcattcgagtgtgggatgcaacaaaaagg
actggtcttcagactttccgcagggagcatgatagattttggatccttgcttctcatcct
gagatgaatcttctagcagctggtcatgacagtgggatgatagtattcaagttagagaga
gaacggcctgctttttctgtgagcagtgattctttattttatgtaaaggatcgctttctc
cgtgtatatgagtattcaacccagaaggacacacagttgataccaattagaaggcccggt
tcaaacaatgtgaatcaaggtccacgaactctttcatacagtccaacagaaaatgctgtc
ttgatatgttcagacacagatggtggttcctatgaactttacattgtacccaaagatagt
tatggtaggggtgatactgttcaagatgcaaaaagaggaaccggaggatcacctgtgttt
gttgcccgaaacaggtttgcggtacttgagaagagcactaatcaagtcctggtaaaaaat
ctcaagaatgaaattgtcaagaaaagccttcttcctatggcaactgatgcaatattttat
gctggcactggaaacttactatgtagggcagaggatagagttgtcatttttgatctccag
cagagaattattcttggagatcttcagacttctttcatcaggtatgttgtttggtcacct
gatatggaaagtgtcgctttgattagcaagcactccatagttatagctgataaaaagctt
gtgcaccgttgcacctttcatgagacaattcgtgtcaaaagtggtgcctgggatgacaat
ggggtattcatatataccacacttacccacattaagtactgtcttcccaacggggattgt
ggaattgtcaaaaccctagatgttcctgtctatattacaaaaatatatgggaacactatc
ttttgcttggatagagatggcaaaaaccgtcctattattattgattcaactgaatatgat
ttcaagttgtgtctgcttagaaagagatatgaccaagtcatgagtatgataagaaactca
gagctctgtggtcaggccatgatttcatatttgcagcagaagggttttccagaagttgct
cttcattttgtgaaggatgagcgcactcgtttcaacttagcacttgaaagtgggaatatt
gagatagctcttgaatctgctaagaagattgatgaaaaagatcattggtataggcttggc
gtggaagcccttcagcagggcaatgcaggtattgttgaatatgcctaccaaaagacaaag
aattttgagaggctctctttcctatatctaataactggaaacgtggagaagttatctaaa
atgatgaaaattgctgaggtcaaaaatgaagtaatgggtcagttccatgatgccttgtac
ctcggtgaagtccgcgagcgtgttaaaattttggaaaatgctggtcatctgccccttgca
tacatcacagctacagtccacgggctcaatgatactgctgagcgtcttgcagaggaactg
ggggataatgttccatcattgccaaagaggaagaaagcttcaatgttgcttcccccaact
cccatcttgggtggtggagactggcctttgctgatggtaacgaaagggatatttgaaggt
ggtctggatattgcaggcaggggaggacaagaggaatatgaagaggctgcggatgcagac
tggggtgagtcattgtacatcggtgaggtggaaaatctacagaatggggtcatcagtatg
gtgcttggtgacgaggaaggacaagaaggaaatgatgatgaggaaggtggatgggatctt
gaggatctggatctgcctcctgatacagacacacctaagactacttccaatgctcgctct
tctgtgtttgtcactccaacacctggcatgcctgtcagccagatttgggtccaaaaatca
tctctagctgctgaacatgcagctgctggaaattttgatactgctatgcggttgttgagc
agacaactagggattaggaacttctctcctttaaaatcattgtttattgatcttcatgtg
ggaagccacactcatctgcttgccttctcctcggcgccggtcatctctgtggcaattgag
agaggttggagtgagtcagctagtcctaatgttcgaggtccacctgctcttatattcagt
tttgctcagttggaggaaaaacttaaagcttcttataaggcgactactggtggaaaattt
tctgatgcacttagactattcctgagcatccttcacaccattcctctgattgtggttgag
tcgagacgagaagtggatgaagtcaaggaattgattgtcatagtgaaagagtatgttttg
ggtttgcagatggagcttaagaggaaggaattgaaagataatcctattcgccagcaggaa
ctggcagcttattttactcactgtaatctgcagcttcctcacttgagacttgcattacag
aatgctatgtctatctgctacaaggccggaaatcttagctcagcagccaactttgctagg
agactgttggagaccaatcccaccaatgaaagccaagccagaacagcccgccaggttctg
caggcagctgagaaaaatatgcgagatgttacacagttgaattatgatttcagaaatcct
tttacagtctgtggggcaacatatgtcccgatataccggggtcagaaggatgtcacttgt
ccttactgtggtactcattttgtactgtctcagcaaggggagctttgtactgtttgtgat
cttgcagttgttggagccgatgcctctggtttgctttgctcggcatcacaaatcagatga
DBGET
integrated database retrieval system
