Solanum stenotomum: 125878011
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Entry
125878011 CDS
T08385
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
125878011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sstn04121
]
125878011
03036 Chromosome and associated proteins [BR:
sstn03036
]
125878011
Enzymes [BR:
sstn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125878011
Ubiquitin system [BR:
sstn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125878011
Chromosome and associated proteins [BR:
sstn03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
125878011
Noncanonical PRC1 (PRC1.1)
125878011
Noncanonical PRC1 (PRC1.3/1.5)
125878011
Noncanonical PRC1 (PRC1.6)
125878011
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
zf-RING_UBOX
zf-C3HC4_4
zf-rbx1
zf-RING_4
zf-Nse
zf-RING_11
zf-RING_10
zf-RING_6
PMAIP1
Motif
Other DBs
NCBI-GeneID:
125878011
NCBI-ProteinID:
XP_049415267
LinkDB
All DBs
Position
9:complement(5197054..5203617)
Genome browser
AA seq
494 aa
AA seq
DB search
MPAQKRFLSNYQDDDNNDEDDENSPEQRQQQQHRRRKQSRRAIEEEQQEVEEEEEDEQDQ
TQDDDGDGDGDDREGKKQSSDDDSDGSGTDPEAFDELIAVSRSEIRTNVQCPICLGIIKR
TRVVMGCQHRFCRECIDKSMRLGNNECPACRIHCASRRSLRDDPGFDTLIEAIYPDVEKY
EEEELVFLEEERAINDQIQASIAKISQRQSEALIKRRKGGKDIASPSSQRTSRNYHAYSR
RKRNSQGTEPERSDPNESENDDHDEIKDSPLKDERGTQTKFRKHRRRKGALTTQTSPSAA
SPDGGHIETAVQLPRVTPSNSPGPALKPETLAWGRGGVRSHNRHGSGGSRNARNYRLSKL
VDFLDSVRAKDDELNIHLEIIPLDKQATPSLKKPHLCCTPSTSVGHLCELVAQETKSQAI
DVELLAVKINTVAGNSIINHSILMDASNMLPQAVDGSNVTLERLERQDTVGGISSSCSLN
KNLILVYVHKNSAV
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgccagcccagaaacgatttttatcgaattatcaagatgatgacaacaacgatgaggat
gatgagaactcgccggagcaacggcagcagcagcagcaccgtcgccggaaacaatccagg
cgagctatagaagaggaacaacaagaagttgaggaagaggaggaagatgagcaagaccaa
acccaggatgatgatggtgatggggatggggatgatcgagaggggaaaaagcaatcttct
gatgatgattctgatggaagtggcactgacccagaagcatttgatgagttgatcgctgtg
tcacgatctgagattcgcaccaatgtacaatgtcctatatgcttaggtattatcaagaga
actcgggttgtgatgggatgccaacaccgtttttgcagggagtgcatagataaatcaatg
agactagggaataatgaatgccctgcttgtcgcatacattgtgctagtcgacgatcattg
agagatgatcctggatttgataccttaattgaggcaatatatccagatgttgagaagtat
gaagaagaggaacttgtctttcttgaagaggaacgagcaataaatgaccagattcaagca
tccattgccaaaatatctcaacgccaatctgaagcattaattaagaggcgcaaaggcggt
aaagacatagcttctccctcctcacaaagaacatctcgcaactatcatgcttattcaaga
agaaaaagaaacagtcagggcacagaacctgagcgatctgatccaaatgagagtgaaaat
gatgatcatgatgagatcaaagattcaccccttaaggatgagcgtggaacacaaaccaag
ttcaggaaacacaggaggcgcaaaggagctctgaccactcagacttctccttcagctgcg
agtccagatggtggacacattgaaactgcagtacagcttccgagagtcaccccaagtaat
tctcctggacctgcactgaagccagaaacacttgcttggggaagaggtggtgttcgaagc
cacaatcgacatggcagtggtggtagcagaaatgctcgtaattatcgactatccaagtta
gttgattttcttgacagtgttcgagcaaaggatgatgagttaaatatccatcttgagata
attccattagacaaacaagcgacaccaagtctgaaaaagccccatctctgctgcacgcca
agcacatcagttgggcatctctgtgaacttgttgctcaggagacaaaatcacaagccata
gatgttgaattactggcggtaaaaatcaacactgttgctggcaactccattatcaaccat
tcaatcttaatggatgcatcaaatatgctacctcaagctgtcgatggttccaatgttact
ctggaacgcttagaaaggcaagatactgtgggaggaatcagttccagttgttctttaaac
aagaatctgatccttgtgtacgtgcacaagaattctgcggtttga
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integrated database retrieval system
