Solanum stenotomum: 125878201
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Entry
125878201 CDS
T08385
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sstn
Solanum stenotomum
Pathway
sstn00040
Pentose and glucuronate interconversions
sstn01100
Metabolic pathways
Module
sstn_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
125878201
Enzymes [BR:
sstn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
125878201
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
125878201
NCBI-ProteinID:
XP_049415355
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Position
10:7858584..7863188
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AA seq
396 aa
AA seq
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MSNFKSIVSLQFFFFSSISLLLLIPSCLAYNVVNFGAKGDGKTDSTAPFLRAWMSACSST
SPSNVYVPKGTYLIRPVTFTGPCRSRIEFCIDGTIVAPVDYNVIGSSNFWILFYKVSRLS
IYGGTIDAKGHSFWSCRRSGHSCPPGARSITLSWCDNVVVSGLKSLNSQIMNMAIDYSSH
VRVEKIRIRSPSGSPNTDGIHIENSRDITITDSIIQTGDDCISIGTGSMNMWIQKIGCGP
GHGISIGSLANSLNEAGVQNITVANSVFTKTQNGVRVKSWARPSNSYAKNLIFRNLVMRN
VGYPIFIDQNYCPDNNCPHQNSGVKVSQVTYKNIKGTSSTQEAIKLDCSQTNPCSGITLQ
DIKLTFVDPHLKRPALTYCKNAQGTHRDTVLPRSCF
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacttcaaatcaattgtatcattacaatttttctttttctcttcaatttcactc
ttattgcttataccttcttgtttagcttacaatgtggttaattttggagctaaaggagat
ggaaagacagactcaaccgcgccatttcttcgtgcttggatgtctgcatgcagctcaact
agtccatccaacgtgtacgttcctaagggaacgtaccttataaggccagtgacattcact
ggcccttgccggagcagaattgagttctgtattgacggaactattgttgctccggttgat
tataatgtcattggaagttcaaatttttggattttgttttataaagttagtagactttct
atctatggtggaacaattgatgctaaaggacatagtttttggtcatgtagaagatctgga
cattcttgtcctcctggagctaggtcaattacattgtcatggtgtgataatgtagtggta
agtggattaaaatcattaaatagtcagataatgaatatggcaattgattatagtagccat
gtaagagttgagaaaataagaataagatctccaagtggaagtccaaatactgatggaatt
catatagagaattcaagagatattactatcacagatagcattattcagaccggagatgat
tgtatatctattggcactggttctatgaatatgtggattcaaaagattggttgtggccct
ggacatggcataagcataggaagtttggccaatagcctaaatgaagcaggagtccagaat
ataacagtggcaaattcagtattcacaaaaacacaaaatggtgtgagggttaagtcatgg
gcaaggccaagtaatagctatgctaaaaatctcatcttcagaaatcttgttatgaggaat
gttggctaccctattttcattgatcaaaactattgccctgataacaattgtccacatcag
aattcaggagtgaaggtgagtcaagtaacatacaagaatataaaagggacatcatcaaca
caagaagcaataaaattagattgcagccaaacaaatccatgtagtggtatcacattacaa
gatataaagctcacttttgtggatcctcatttgaaaagaccagccttaacatattgtaaa
aatgcacaaggcacacatcgtgacacggtccttcctcggagttgtttctaa
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