KEGG   Streptomyces stoeckheimensis: ACE1OC_16880
Entry
ACE1OC_16880      CDS       T11171                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ssto  Streptomyces stoeckheimensis
Pathway
ssto03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ssto00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ACE1OC_16880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssto03021]
    ACE1OC_16880
   03400 DNA repair and recombination proteins [BR:ssto03400]
    ACE1OC_16880
Enzymes [BR:ssto01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ACE1OC_16880
Transcription machinery [BR:ssto03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ACE1OC_16880
DNA repair and recombination proteins [BR:ssto03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ACE1OC_16880
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 TarH Apocytochr_F_C RnfC_N
Other DBs
NCBI-ProteinID: XLF70674
LinkDB
Position
complement(3776661..3780560)
AA seq 1299 aa
MLDVNFFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDDERRTRDLPSLEAHVSVERQQIENRRDSDLEGRAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWARFKNLKVQDLEGDELL
YRELRDRFGTYFDGCMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNKPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDVKGE
GRAFGSTAEATMAFDNGELALQSAVDIRFPVGTIPPRGWVAPIAEEGEQEFQPGDSFRLK
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFHWAT
RSGVTVAISDVVVPEAKKAIVKGYEELDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLT
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLKIAVRG
EDGVLRKADDVETSIYARMLAEDVVIDGKVIAPANVDLGDVLIDALVANGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKIVITPDDGSEETAFPISKRAKV
IVGEGDHVEVGQKLTMGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLARYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNG
NT seq 3900 nt   +upstreamnt  +downstreamnt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgcggacgacatc
cgaacctggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggtaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgttgtggcgtc
gaagtcacgcgcgccaaggtgcgtcgcgagcggatgggccacatcgagcttgccgctccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctcggatacctgctggacctc
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcacgttcgtggac
gacgagcgccgcacccgcgacctcccgtccctggaggcgcacgtctccgtcgagcgccag
cagatcgagaaccgacgcgactcggacctcgaaggccgtgccaagaagctcgagaccgac
ctggccgagctcgaggccgagggcgcgaaggccgacgtacgccgcaaggtgcgcgaaggt
gccgagcgcgagatgaagcagctccgtgaccgcgcccagcgcgagatcgaccgcctcgac
gaggtgtgggcccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggtacgtacttcgacggctgcatgggcgccgcggcg
ctccagaagcgtctggagtccttcgacctcgacgaagaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacaagcccaagggcatggttctggactgcgtgccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctgaagcgccttctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgcttcaggaggccgtcgacgcc
ctcttcgacaacggtcgtcgtggtcgcccggtcaccggtcccggcaaccgtcccctgaag
tccctcagcgacatgctgaagggcaagcagggtcgattccgtcagaacctcctcggcaag
cgcgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgtggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggcgaagcgcatggtcgagcgcggccgc
acggtcgtctacgacgtgctcgaagaggtcatcgccgagcacccggttctcctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccccagctggtcgaaggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctttcggcagaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggcagacggtcgtcccgtcaccatgccgacccaggac
atggtgctgggtctgttcttcctcaccaccgacggcgagctccgcgacgtcaagggcgag
ggccgtgcgttcggctcgaccgccgaggcgaccatggcgttcgacaacggtgagctggct
ctccagtcggccgtcgacatccgcttcccggtgggcaccatcccgccgcgcggctgggtg
gccccgatcgccgaagagggcgagcaggagttccagccgggcgacagcttccgtctgaag
acgaccctgggtcgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggcggagcgctacccc
aaggtgatcgtggcggcgacgctcgacaacctgaaggcggccggcttccactgggcgacc
cgttcgggcgtcaccgtggccatctccgacgtcgtcgtgcccgaggccaagaaggccatc
gtcaagggctacgaggagctggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtt
gccgaggcgatgaacgcgaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcgacagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcgtccgatcaaggcgtccttccgtgagggcctcacc
gttctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgccctg
cgtaccgccgactcgggttacctcacccgtcgtctggtggacgtctcgcaggacgtcatc
atccgcgaggaggactgcggcaccgagcgcggcctgaagctgaagatcgccgttcgcggc
gaggacggcgtgctgcgcaaggccgacgacgtcgagacctcgatctacgcccgcatgctg
gccgaggacgtcgtcatcgacggcaaggtcatcgcgccggccaacgtcgacctcggtgac
gtgctcatcgacgccctggtcgccaacggcgtcgaggaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggacgctcgctcgccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacg
cagggtctgccgcgtgtcgtcgagctcttcgaggcccgtaccccgaagggtgtcgccccg
atctccgaggccgccggccgcgtgcggatcgaggagaccgagaagacgaagaagatcgtc
atcacgcccgacgacggcagcgaggagacggccttcccgatctccaagcgcgccaaggtc
atcgtcggcgagggcgaccacgtcgaggtcggccagaagctgaccatgggtgccaccaac
ccgcacgacgtgctgcgcatcctcggccagcgtgcggtccaggtccacctggtcggcgaa
gtccagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcggagctcctgccg
ggcgagctggtcgagcggtcgaagttcgagaccgagaaccgtcgtgtggtcaccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctcgcgacc
gagtcctggctgtcggcggcgtccttccaggagacgaccagggttctgacggacgcggcg
atcaacgccaagtccgactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctcgcccgctaccgcaacatccgggtcgagccgaccgaggaa
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgcccttcggc
accggctccggccaggccgtcccgctggaggactacgactacggcccgtacaacggctga

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