Streptomyces stoeckheimensis: ACE1OC_17750
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Entry
ACE1OC_17750 CDS
T11171
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ssto Streptomyces stoeckheimensis
Brite
KEGG Orthology (KO) [BR:
ssto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssto03016
]
ACE1OC_17750
Enzymes [BR:
ssto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACE1OC_17750
Transfer RNA biogenesis [BR:
ssto03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACE1OC_17750
Prokaryotic type
tRNA splicing ligases
ACE1OC_17750
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XLF70831
LinkDB
All DBs
Position
complement(3948578..3949771)
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AA seq
397 aa
AA seq
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MSYVEVPGAKVPIRMWTDPASVEDSAMRQLQNTAGLPWIKGLAVMPDVHYGKGATVGSVI
AMKDAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSGLRSQIEKAIPVGAGMHREAVDPG
RLYGFSERGFGDLWERFDYVADAVKFRRERALRQMGTLGSGNHHQEINIDDEGAVWLTLH
SGSRGIGNQLADHHIGIARGLSHNQGLVDRDLAVFLSATPEMAAYRHDLYWAQEYAKYNR
AVMMSLMKEVIRRQFRKAKVSFEQEISCHHNYVAEERYDGVDLLVTRKGAIRAGSGEYGI
IPGSMATGTYIVKGLGNKAAFNSASHGAGRRMSRTAAKKRYTAQDLADQTKGVECRKDSG
VVDEIPAAYKPIEQVMEQQRDLVEVVAKLRQVVCIKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacgtagaagtgcccggggcgaaggtccccatccggatgtggaccgacccggcg
tcggtcgaggacagcgcgatgcgccagctccagaacaccgccggccttccctggatcaag
ggcctcgccgtcatgccggacgtccactacggcaagggcgccacggtcggctcggtcatc
gccatgaaggacgcggtgtgcccggcggcggtgggcgtggacatcggctgcggcatgtcg
gcggtgaagacctccctgaccgcgaacgacctcccgggcgacctgtcgggcctgcgctcg
cagatcgagaaggcgatcccggtgggggcggggatgcaccgcgaggcggtggacccgggg
cggctgtacgggttctcggagcgggggttcggggatctgtgggagcggttcgactatgtc
gcggatgcggtgaagttccggcgggagcgggcgctgcggcaaatgggaacactcggctcg
ggcaaccaccaccaggagatcaacatcgatgacgagggtgctgtgtggctgaccttgcac
tctggttcccgaggcatcgggaaccagctcgctgatcaccacatcggcatcgcgcggggg
ctctcccacaaccaggggctggtcgaccgggacctcgcggtcttcctttcagcgactccg
gagatggctgcgtaccggcacgatctctactgggcgcaggagtacgccaagtacaaccgc
gcggtgatgatgagcctgatgaaggaggtcatccgccggcagttccgcaaggcgaaggtc
tccttcgagcaggaaatcagctgccaccacaactacgtggcggaggagcggtacgacggc
gtcgacctgctggtcacccgtaagggcgcgatccgcgccggcagcggcgagtacgggatc
atcccgggttcgatggccaccggtacctacatcgtgaagggcctgggcaacaaggccgcc
ttcaactcggcctcgcacggagcgggccggcggatgagccggaccgcggccaagaagcgg
tacacggcacaggatctggcggaccagaccaagggcgtggagtgccgcaaggactcgggc
gtcgtggacgagatcccggcggcgtacaagccgatcgagcaggtcatggagcagcagcgg
gacctcgtggaggtcgtggccaagctccggcaggtcgtctgcatcaagggctga
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