Streptococcus suis 05ZYH33 (serotype 2): SSU05_0122
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Entry
SSU05_0122 CDS
T00514
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit/160 kD subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssu
Streptococcus suis 05ZYH33 (serotype 2)
Pathway
ssu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SSU05_0122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssu03021
]
SSU05_0122
03400 DNA repair and recombination proteins [BR:
ssu03400
]
SSU05_0122
Enzymes [BR:
ssu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SSU05_0122
Transcription machinery [BR:
ssu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SSU05_0122
DNA repair and recombination proteins [BR:
ssu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SSU05_0122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ABP89092
UniProt:
A4VSK3
LinkDB
All DBs
Position
114441..118148
Genome browser
AA seq
1235 aa
AA seq
DB search
MFKNLRYGNPSSHKKRKGLLVVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLK
PERDGLFDEVIFGPTKDWECSCGKYKRIRYKGITCDRCGVEVTRAKVRRERMGHIELKAP
ISHIWYFKGIPSRMGLTLDMSPRALEEVIYFAAYVVIDPKDTPLEHKSIMTEREYRERLR
EYGYGSFVAKMGAEAIQDLLKQVDLPKEIAALKEELKTASGQKRIKAVRRLDVLDAFYKS
GNKPEWMILNILPVIPPDLRPMVQLDGGRFAASDLNELYRRVINRNNRLARLLELNAPGI
IVQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFS
GRSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVARDIAGNVKAAKRLIERGDDRIWD
ILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHV
PLSEEAQAEARILMLAAEHILNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMVFKDA
DEAVMAYRNGYVHLHTRVGIATDSLDKPWKDNQKHKVMMTTVGKILFNAIMPEGLPYLQE
PNNANLTEGTPDKYFLEPGSDIKAAIAELPINPPFKKKNLGNIIAEIFKRFRTTETSALL
DRLKDLGYYHSTLAGLTVGIADIPVIDNKAEIIEESHERVEQIKKQFRRGMITDDERYAA
VTDEWRSAKEKLEKRLVEKQDPKNPIVMMMDSGARGNISNFSQLAGMRGLMSAPNGRIME
LPILSNFREGLSVLEMFFSTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGT
DRGLDIRSITDGKEMIEPLEERLQGRYTKKTVKHPETGAVIIGPNQLITEDIAREIVNAG
VEQVTIRSVFTCNTRHGVCRHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFH
TGGVASNSDITQGLPRVQEIFEARNPKGEAVITEVKGEVIAIEEDASTRTKKVFVKGKTG
EGEYVVPFTARMKVEVGDQVARGAALTEGSIQPKRLLEVRDVLAVETYLLSEVQKVYRSQ
GVEIGDKHIEVMVRQMLRKVRVMDPGDTDLLMGTLMDITDFTDANAEVVIAGGIPATARP
VLMGITKASLETNSFLSAASFQETTRVLTDAAIRGKRDNLLGLKENVIIGKIIPAGTGMA
RYRNLEPQAINEVEIIEDTVAEELAAEAELEAVTE
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
ttgttcaagaatttgaggtatgggaatccatcctctcacaagaaaagaaagggattatta
gtggttgacgtaaatcgatttaaaagtatgcaaatcacgttagcttcaccaagtaaggtt
cgttcatggtcttacggtgaggttaaaaaacctgaaacaatcaactatcgtacacttaaa
ccagaacgtgatggactttttgacgaagtcatcttcggtccaacaaaagactgggagtgt
tcatgtggtaaatacaagcgtatccgttataaagggattacttgtgaccgctgtggtgta
gaagtgactcgtgcaaaagtacgtcgtgaacgtatgggacacattgagttgaaagcacca
atttcacacatttggtatttcaaaggtattccaagtcgtatgggcttgaccttggatatg
agcccacgtgcgcttgaggaagttatctacttcgcagcttacgtggtgatcgatccgaaa
gatacaccgcttgagcacaagtcaatcatgacagagcgcgaataccgtgagcgtttgcgt
gaatatggttatggttcattcgttgccaaaatgggtgcagaagcgatccaagacctcttg
aaacaagtcgatcttccaaaagaaatcgcagctttgaaagaagaattgaaaacagcttct
ggtcaaaaacgcattaaagcagttcgccgcttggatgtattggatgctttctataaatct
ggtaacaagcctgagtggatgattctcaatatccttccagttattccaccagatttgcgt
ccgatggttcagttggatggtggccgttttgccgcatctgacttgaacgaactctaccgc
cgtgttatcaaccgtaacaaccgtttggctcgtctcttggaacttaatgctccaggtatc
atcgtacaaaacgaaaaacggatgctccaagaagctgtggatgctttgattgacaacggt
cgccgtggtcgtccaattacaggaccaggtagccgtccacttaaatcactcagccacatg
cttaaaggtaagcaaggacgattccgtcaaaacttgcttggtaagcgtgttgacttctca
ggccgttccgttatcgccgttggtccaactcttaaaatgtaccaatgtggtgtaccacgt
gaaatggctatcgagctcttcaaaccgtttgtcatgcgcgaaatcgttgcccgtgatatt
gctggaaacgtaaaagctgcaaaacgtttgattgagcgtggtgatgatcgtatttgggat
atcttggaagaagtgatcaaagaacacccagttcttttgaaccgcgcacctacccttcac
cgtttgggtatccaggcttttgagccagttctaatcgacggtaaagcccttcgtttgcac
ccgcttgtctgtgaagcctacaacgccgactttgacggtgaccagatggcgattcacgtt
ccattgtcagaagaagcacaagcagaagcacgtatccttatgcttgcggcagaacacatc
cttaaccctaaagatggtaaacctgtcgtaacaccatctcaggatatggttttgggtaac
tactacttgaccatggaagatgctggtcgtgaaggtgaaggtatggtcttcaaggatgcg
gatgaggctgttatggcttaccgcaatggctatgttcacttgcatactcgtgttggtatc
gcaacagatagcctcgataaaccttggaaagacaaccaaaaacacaaggtcatgatgaca
actgtcggaaaaatcttgttcaacgcaattatgccagaaggtcttccatacttgcaagag
ccaaacaatgctaacttgacagaaggaactcctgataaatacttcttggaaccaggatca
gatattaaggctgccattgcagaattgccaatcaacccaccattcaagaagaaaaatctt
ggtaacatcatcgctgaaatcttcaagcgtttccgtacaactgaaacatcagcccttctt
gaccgtttgaaagacttgggttattatcactcaacactcgctggtttgacagtgggtatt
gccgatatcccagttatcgacaacaaggctgaaatcattgaagaatctcacgaacgtgta
gaacaaatcaagaaacaattccgtcgtggtatgattactgacgatgagcgctatgcagct
gttacagatgaatggcgttcagctaaggaaaaattggaaaaacgcctggttgaaaaacaa
gatcctaagaacccaatcgttatgatgatggactctggtgcccgtggtaacatctccaac
ttctcccagttggccggtatgcgtggtctgatgtcagctccgaacggacgtatcatggaa
ttgccaatcttgtctaacttccgtgaaggtctttcagtattggaaatgttcttctcaact
cacggtgcccgtaagggtatgacggatacggccttgaagacagccgactcaggttacttg
actcgtcgtttggttgacgttgcccaagacgttattatccgtgaagacgactgtggaaca
gaccgtggtcttgacatccgttcaatcacagatggcaaggaaatgatcgagccacttgaa
gagcgtttgcaaggtcgttacactaagaaaactgttaaacatcctgaaacgggtgccgtt
atcattggtccaaaccaattgattacggaagatattgcccgtgaaattgtcaatgcaggt
gttgaacaagtaaccatccgtagcgtatttacatgtaacactcgtcacggtgtctgccgt
cattgttatggtatcaacttggcgacaggtgatgcggttgaagtgggtgaagcagttggt
acaatcgctgcccaatcgatcggtgagcctggtacacagcttacaatgcgtaccttccac
acgggtggtgtagcctcaaacagcgatattacgcagggtcttcctcgtgtccaagagatc
tttgaagcccgtaacccgaaaggggaagcggttatcactgaggttaaaggtgaagttatc
gctattgaagaagatgcttctactcgtaccaagaaagtctttgttaaaggtaaaactggc
gaaggcgaatatgtggttccatttacagcccgtatgaaggttgaagttggggaccaagtc
gcgcgtggagcagcccttaccgaaggttctatccaaccaaaacgcttgcttgaagtccgt
gatgtcttggcggttgaaacttaccttctttctgaagttcaaaaagtttaccgtagccag
ggtgtagaaatcggcgacaagcacatcgaggtaatggttcgtcaaatgcttcgtaaagtt
cgtgtcatggatccaggtgacacagatcttctcatgggtaccctcatggatatcacagac
tttacagatgccaatgcggaagtggttattgcgggtggtattccggcaacagctcgtcca
gttcttatgggtatcacgaaggcttcccttgaaaccaactcattcttgtctgccgcatcc
ttccaagaaacaactcgcgttcttacagatgcagctattcgtggtaaacgtgacaacctt
ctcggtcttaaagagaacgttatcatcggtaagattatcccagcaggtacaggtatggcc
cgctaccgtaatcttgaaccacaagccatcaatgaagttgaaatcattgaagacacagta
gcagaagagcttgctgcagaagcagagcttgaagctgtaactgaataa
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integrated database retrieval system
