Sphingomonas suaedae: FPZ54_01725
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Entry
FPZ54_01725 CDS
T07976
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ssua
Sphingomonas suaedae
Brite
KEGG Orthology (KO) [BR:
ssua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssua03016
]
FPZ54_01725
Enzymes [BR:
ssua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FPZ54_01725
Transfer RNA biogenesis [BR:
ssua03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FPZ54_01725
Prokaryotic type
tRNA splicing ligases
FPZ54_01725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDX24872
UniProt:
A0A518RBL8
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All DBs
Position
complement(348992..350215)
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AA seq
407 aa
AA seq
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MTQFSVHQTHHAPLKLWDSAGPFEAGAMQQLRNVASLPFIFRHVAGMPDVHWGMGATVGS
VIATQRAIVPAAVGVDIGCGMMAVRTSLTASQLPDSLAALRAEIERAVPKGMESSQSANH
SKGGWASTPNSVSRAWYDRFEDRWRKIVAKNPKVDGKTSDQLASMGGGNHFIEVCLDEEQ
RVWAMLHSGSRGTGNRIGTYFINAAKEAIVKETLDFHLVDKDLAFLTEGSQLFDDYIEAM
HFAQDYAMANRELMMVRVLEALRKHAPGFKTDKAAINCHHNYATREVHFGEQVWVTRKGA
VSAREGELGIIPGSMGTGSFIVEGLGNQESFCSCSHGAGRVMSRGQAKKLISLEDHKAAM
QGIEARVDEGVLDESPAAYKDIGAVMDAQQDLVRIRHRLRQVVNVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgacccagttttccgttcaccagacgcatcacgcgccgctcaagctgtgggacagcgcc
ggaccgttcgaggccggcgcgatgcagcagctgcgcaacgtcgcctcgctcccgttcatc
ttccgccatgtcgcggggatgcccgatgtccattggggcatgggcgcgacggtcggctcg
gtgatcgcgacgcagcgcgcgatcgtgcccgccgcagtgggcgtggacatcggttgcggg
atgatggcggtgcgcacctcgctcaccgccagccagctgcccgacagcctcgccgcactg
cgtgccgagatcgaacgcgccgtgcccaaggggatggagtcgagccagtcggccaaccac
agcaagggtggctgggcgagcacgccgaacagcgtgtcgcgcgcctggtacgaccggttc
gaggaccgctggcgcaagatcgtcgccaagaacccgaaggttgatggcaagaccagcgac
cagctcgcctcgatgggcggggggaaccactttatcgaggtgtgcctcgatgaagagcag
cgcgtgtgggcgatgctccactccggctcgcgcggcacggggaaccggatcgggacgtac
ttcatcaacgccgccaaggaggcgatcgtgaaggagacgctcgacttccacctggtcgac
aaagacctcgccttcctgaccgaaggatcgcagctgttcgacgactatatcgaagcgatg
cactttgcgcaggattacgcgatggccaatcgcgagctgatgatggtccgcgtgctggag
gcgctgcgcaagcacgcccccggcttcaagaccgacaaggccgcgatcaactgccaccac
aattatgcgacccgggaagtgcatttcggcgagcaggtgtgggtgacccgcaagggcgcg
gtgagcgcccgggaaggcgaactcgggatcatcccgggttcgatgggcacgggcagcttc
atcgtcgaggggctgggcaaccaggagtcgttctgctcctgctcgcacggcgccggccgc
gtgatgtcgcgtgggcaggccaagaagctgatttccctggaggaccacaaggccgcgatg
cagggcatcgaggcgcgggtggacgaaggcgtgctggacgaaagcccggccgcctacaag
gacatcggtgcggtgatggacgcgcagcaggacctggtccgcatccgccaccggctgcgc
caggtggtgaatgtgaaggggtga
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