Sphingomonas suaedae: FPZ54_05115
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Entry
FPZ54_05115 CDS
T07976
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ssua
Sphingomonas suaedae
Brite
KEGG Orthology (KO) [BR:
ssua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssua03016
]
FPZ54_05115 (rnd)
Enzymes [BR:
ssua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FPZ54_05115 (rnd)
Transfer RNA biogenesis [BR:
ssua03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FPZ54_05115 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QDX25464
UniProt:
A0A518RDH8
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All DBs
Position
1060077..1061255
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AA seq
392 aa
AA seq
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MHIHGLIEDSATLANLCTRLAQQPFITVDTEFMRENTFYPELCLIQIADTNEAAAIDPMA
PGLDMTPLLDLLVNNEDVLKVFHAGGQDLEIVYNLTGKTPHPLFDTQVAAMALGQGEQIG
YSNLVETYLGISVDKGARFTDWSRRPLDKRQIDYAIADVTHLSEIFPKMLAKLKKTGRGA
WLDEEMERIADPENYRNDPEQAWQRIRISSRKAEVLGRLKALAAWREREAQQKNLPRGRI
VKDETIADLAGNPPRKQADLTRVRGLSASWGGNDIGGRLMAALEAATPMPSDELPARDDR
KLPLGKEGALVADLLKLLLKIRARDINVAARLLARTDDLEALAAGQRDDLAILRGWRFEQ
FGRDALALVEGQLGFTVRNGKLKMTRTEEPVP
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgcatattcacggcctgatcgaagactcggcaacgcttgccaatctctgcacccgcctc
gcgcagcaaccgttcatcacggtggataccgagttcatgcgggaaaacaccttctacccc
gaactgtgcctgatccagatcgccgacaccaacgaggccgcggcgatcgatccgatggcg
ccggggctcgacatgaccccgttgctcgacctgctggtcaacaatgaagacgtgctcaag
gtcttccacgccggcggccaggacctcgagattgtctacaacctgaccggcaagacgccc
cacccgctgttcgatacccaggtcgcggcgatggcgctgggtcagggtgagcagatcggc
tattccaacctcgtcgagacctatctcggcatcagcgtggacaagggcgcgcgcttcacc
gactggtcgcgccgaccactcgacaagcgccagatcgattatgcgatcgccgatgtgacc
cacctctccgaaatctttcccaagatgctcgccaagctcaaaaagaccgggcgcggcgcc
tggctggacgaggagatggagcggatcgccgatcccgaaaactaccgcaacgaccccgaa
caggcatggcaacgcatccgcatctccagccgcaaggccgaagtgctgggccgtctcaag
gcgctcgccgcatggcgtgaacgcgaggcgcagcagaagaacctgccgcgcggccgcatc
gtcaaggacgagacgatcgccgatctcgccggcaatccgccgcgaaagcaggccgatctc
acccgcgtacgcggcctttccgcctcatggggcggcaacgatataggcgggcggctgatg
gccgcgcttgaagccgccacgccgatgccgagcgacgaactgcccgcccgcgacgaccgc
aagctcccgctgggcaaggaaggtgcgctggtcgccgacctgctcaagctgctgctcaag
atccgcgcgcgcgacatcaacgtcgccgcccgcctgctcgcacgcaccgacgatctcgaa
gcgctggcggcggggcagcgcgacgatctggcgatcctgcgcggctggcgcttcgaacag
ttcggccgcgatgcgcttgcgctggtcgagggtcagcttgggttcaccgtgcgcaatggt
aagctcaagatgacccgaaccgaggagcccgttccatga
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