Sphingomonas suaedae: FPZ54_08185
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Entry
FPZ54_08185 CDS
T07976
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ssua
Sphingomonas suaedae
Pathway
ssua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ54_08185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssua03019
]
FPZ54_08185
Enzymes [BR:
ssua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FPZ54_08185
Messenger RNA biogenesis [BR:
ssua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FPZ54_08185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDX26002
UniProt:
A0A518REV4
LinkDB
All DBs
Position
1709562..1711016
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AA seq
484 aa
AA seq
DB search
MTKFNTLGLSETTLAALAAKGYTDATPIQAQSIPALLEGRDLLGIAQTGTGKTAAFMLPS
IERLVASNKRAQPRGCRMLVLAPTRELASQIAQSARDYSKGTKLSVATVFGGTSIHKNKT
DLARGVDIVVATPGRLVDLIEQSYAILLGIEILVLDEADQMMDLGFIHALKRIVRELPSK
RQTLFFSATMPKSIRDLAGQFIKDPVEVKVTPVATTAERVEQFVTFVNQAEKQSLLTIAL
RDESIDRALVFTRTKHGADRVVKLLAASGVASNAIHGNKSQPQRERALGEFKSGKVKILV
ATDIAARGIDVSGVSHVFNFELPNVPDQYVHRIGRTARAGATGVAISFCADDERPYLRDI
EKLIRQKVAIQPLPEDFVAESARIKSSRGPIPMSRDEQNGRNGRTMQDRNAHHRAAQRDR
GPRGNPAGERRETLGTAGPRGGEGAGAGDKPRFYGPRKKKFSPRPAGAGGGGQRSGGGQG
QRRG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagttcaataccctcggcctgtccgagaccacgctggctgcgctggcggcaaag
ggctataccgacgcgacgccgatccaggcgcagtcgatccccgctttgctcgaagggcgc
gacctgctcggcatcgcccagaccggcaccggcaagaccgccgcgttcatgctcccctcg
atcgaacgcctcgtcgcgtcgaacaagcgggcgcagccgcgcggctgccgcatgctcgtc
ctcgcccccacccgcgaactggccagccagatcgcccagagcgcccgcgactatagcaag
ggcaccaagctttcggtcgcgaccgtgttcggcggcacctcgatccacaagaacaagacc
gatctggcgcgcggcgtcgacatcgtcgtcgcgacccccggtcgcctcgtcgacctgatc
gaacaaagctatgcgatcctgctcggcatcgagatcctggtgctggacgaggccgaccag
atgatggacctcggcttcatccatgcgctcaagcgcatcgtccgcgagctgcccagcaag
cgccagactttgttcttctcggccaccatgcccaagtcgatccgcgacctggccggccag
ttcatcaaggatccggtcgaggtgaaggtgacccccgtcgccaccaccgccgagcgcgtc
gagcagttcgtgaccttcgtcaatcaggcggagaagcagtcgctgctgaccatcgcgctg
cgcgacgagagcatcgaccgcgcgctggtcttcacccgcaccaagcatggcgccgaccgc
gtcgtgaagctgctggcggcaagcggcgtcgcgtcgaacgcgatccacggcaacaagagc
cagccgcagcgcgagcgcgcgctgggcgagttcaagtcgggcaaggtcaagatcctggtc
gcgaccgacatcgcggcgcgcggcatcgacgtgtcgggggtgagccatgtgttcaacttc
gaactgcccaacgtgccggaccaatatgtccaccgcatcggccgcaccgcccgtgccggc
gcgaccggcgtcgccatcagcttctgcgccgatgacgagaggccgtatctccgcgatatc
gaaaagctgatccgccagaaggtcgcgatccagccgctgcccgaggatttcgtggccgaa
tcggcccgcatcaagtcgagccgcggcccgatcccgatgagccgcgacgagcagaatggc
cgcaacggccgcacgatgcaggatcgcaacgcccatcaccgcgccgcccagcgcgaccgc
ggcccccgcggcaatcccgccggtgagcgtcgcgagacgctcggcacggccggtccgcgc
ggtggcgaaggtgccggtgcaggcgacaagccgcgcttctacggcccgcgcaagaagaag
ttctcgccccgccccgccggtgccggcggcggcggccagcgcagcggcggcggccagggc
cagcgccgcggctaa
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