Sphingomonas suaedae: FPZ54_17675
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Entry
FPZ54_17675 CDS
T07976
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ssua
Sphingomonas suaedae
Pathway
ssua02020
Two-component system
ssua02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ssua00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FPZ54_17675 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FPZ54_17675 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssua03021
]
FPZ54_17675 (rpoN)
Transcription machinery [BR:
ssua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FPZ54_17675 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
Arg_repressor
HTH_38
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
QDX27654
UniProt:
A0A518RJM8
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All DBs
Position
3734420..3735925
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AA seq
501 aa
AA seq
DB search
MSLAPRLDLRQSQSLVMTPQLQQAIKLLALSNLEIETFIAEELEKNPLLDATRSDDERGD
IDTPEPTDPVVERDGPADSSELIAAGDATGEAALDVDLTAETFHHDSPSDSVGGLDGGLG
MSGTGAGGAEDGADFDSFSAPDLNLADHLTAQIGAVIDGADLFIAQHLIDQIDECGYLTA
SLLDIATRLGVPLARVEAVLAVIQTLDPTGVGARDLAECLALQAKEADRYDPCMAALIAN
LDLLARGELGRLKRICGVDDEDMADMIRELRSYDPKPGCRYGGDPMQAVTPDIFVAQRGT
GWAVELNSATLPRVLVNRAYYAEVSTGPQDKSSKAWLSDMLASANWLVKALDQRQRTIIK
VAGEIVKQQEAFFRHGVSHLKPLTLRQIADAIEMHESTVSRVTSNKYLSCARGLFELKYF
FTSAIQSSEGGDAVSAEAVKSAIRALIQAEDPKKILSDDTLVELLNAKGFDIARRTVAKY
RESMGIGSSVQRRRQKALQGA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgccccccgcctcgatctgcgccagtcgcaatcgctggtgatgacgccgcag
cttcagcaggcgatcaagctgctggcgctctcaaatctcgaaatcgaaaccttcatcgcc
gaggagctggaaaagaatccgctgctcgacgcgacccggagcgacgatgagcgcggcgat
atcgatacgcccgaaccgaccgatccggtcgtcgaacgcgacggcccggcggattcgagc
gaactgatcgcggcgggcgacgccaccggcgaggccgcgctggatgtcgatctgaccgcc
gagacgtttcaccatgacagcccctccgattcggtcggcggtctcgatggcgggctgggg
atgagtggtaccggcgctggcggagcggaggacggggccgatttcgacagtttttccgcg
cccgatctcaaccttgccgatcatctgacggcccagatcggcgcggttatcgacggtgcc
gatctgttcatcgcgcagcatctgatcgaccagatcgacgagtgcggctatctcaccgcc
tcgttgctcgacatcgccacgcggctgggcgtcccgctcgcgcgggtggaggcggtgctg
gcggtgattcagacgctcgatcccaccggcgtgggcgcgcgcgacctggccgaatgcctg
gcgcttcaggcgaaggaggcggaccgctacgatccctgcatggcggcgctgatcgccaat
ctcgacctgctcgcgcgcggcgagctcgggcggctcaagcgcatttgcggcgtcgacgac
gaggatatggcggacatgatccgcgagctgcgcagctacgatcccaagcccggctgtcgc
tatggcggcgatccgatgcaggcggtgactccggacatcttcgtcgcgcagcgcggaacc
ggctgggcggtcgagctgaacagcgcgacgctgccccgcgtcctcgtcaaccgcgcatat
tatgccgaggtgtcgaccgggccgcaggacaagtcgagcaaggcctggctgtccgacatg
ctcgccagtgccaattggctggtcaaggcgctcgaccagcgccagcgcacgatcatcaag
gtggcgggcgagatcgtgaagcagcaggaggcgttctttcgccacggcgtcagccatttg
aagccactcacgctgcgccagatcgccgatgcgatcgagatgcacgagtccaccgtcagc
cgcgtgacgagcaacaaatatctctcctgcgcgcgcgggctgttcgagctcaaatatttc
ttcacctcggcgatccagtcgtccgaaggcggcgatgcggtgtcggccgaagcggtgaag
agcgcgatccgcgcgctgatccaggcggaggatccgaagaagatcctgtccgacgacacg
ctggtcgaactgctcaacgccaagggcttcgacatcgcccggcgtaccgtcgccaaatat
cgcgaatcgatggggatcggcagctcggtccaacggcgccggcaaaaggcgttgcagggc
gcctga
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