Sphingomonas suaedae: FPZ54_18165
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Entry
FPZ54_18165 CDS
T07976
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ssua
Sphingomonas suaedae
Pathway
ssua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ54_18165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssua03019
]
FPZ54_18165
03009 Ribosome biogenesis [BR:
ssua03009
]
FPZ54_18165
Enzymes [BR:
ssua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FPZ54_18165
Messenger RNA biogenesis [BR:
ssua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FPZ54_18165
Ribosome biogenesis [BR:
ssua03009
]
Prokaryotic type
rRNA processing factors
FPZ54_18165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Anti-TRAP
Exog_C
Motif
Other DBs
NCBI-ProteinID:
QDX27742
UniProt:
A0A518RJW4
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All DBs
Position
3836603..3839281
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AA seq
892 aa
AA seq
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MTMRMLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEAALREADDGDEDHDDEDGEV
EVLERPADEDEEHAEAAEGDAEGEGESGKGGRRRRGRKGNDDQVEALRQRRMSLRRRYKI
QDVIRRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTAHGGGISRKISSAADRK
RLKTIMSDLKLPPSMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIREKTLQSSAPALVYG
DSDLMKRAIRDIYNKDIDEVIVEGDDGYRQAKDFMKLLMPSHAKKVKHYSDAVPLFQRAG
VEEQLSAMYHPVVQLKSGGYLVINPTEALVSIDINSGRSTREHSIEQTATATNLEAAQEI
ARQLRLRDMAGLVVIDFIDMDHSSNVRKVEKAMKEALKNDRARIQVGRISAFGLMEMSRQ
RLRTGVLEASTRQCPHCEGTGLVRTASSAGLSALRMIEDEAARGRGSHITLRCSQEAAFY
VLNNKRADIAEIEDRYGVRVEILSDGELEGARMSVEASGPPPLHAPKFAAAIEEVEEDVV
EEIDEEEEDEEVEARAPRERRERDEGDSEAGRKRRRRRRGRRNRRDDESDAPRDDAAEAE
SDGADNAEGEEEAANAAETVASDENGEPRKRRRRGRRGGRRGAGEGEGAEETAEAAEPEV
QPEPVADAVDAAPAKPKRSRRKKADVEAEAAPAADADAAGTDGVRAEAVSEEAPAEAEAP
AKPKRTRRKKADTDAAPAMAETAAVETVAAEAPAETPVAEEAPAKPKRTRRKKVDAEPVA
AEQPVAVEAVSQDLAAPAAVSASPERSEGETAGGDEESGSPRRGWWQRTFGA
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgcgtatgctgatcgacgcacgccaccgggaagagacccgcgtggcggtcgtc
aaaggaaaccgaatcgaggagtttgatttcgagagtgccgagcgcaaacagctcaagggc
aatatctatctggcaaaggtaacccgcgtcgaaccgtcgcttcaggcggcgttcgtcgaa
tatggcggcaatcgccacggcttcctggcgttcagcgaaatccatcccgactattatcag
atccccaaagaggatcgcgaggcgctgttgcgcgaggaagccgagcacgccgccgaggaa
gccgcgctgcgcgaggcggatgacggcgacgaggatcatgacgacgaggacggcgaggtc
gaggtgctcgagcgtccggccgacgaggacgaggaacatgccgaggcggccgaaggcgac
gccgagggtgaaggcgagtccggcaagggcggtcgccgccgtcgcgggcgcaagggcaat
gacgatcaggtcgaggcgctgcgccagcgtcgcatgagcctgcgccgccgctacaagatt
caggacgtgatccgccgccgccaggtgctgctggttcaggtcgtcaaggaagagcgcggc
aacaagggtgcggcgctgaccacctatctgtcgctcgccggtcgctattgcgtgctgatg
cccaacaccgcgcatggcggcgggatcagccgcaagatcagctcggctgccgatcgcaag
cgcctcaagacgatcatgtcggacctgaagctgccgccgtcgatgggctgcatcgtccgc
accgccgggcttcagcgcaccaagaccgagatcaagcgcgacttcgactatctcgcccgg
ctgtgggacgagattcgcgaaaagacgctgcaatcttcggcgcccgctctggtctatggc
gacagcgacctgatgaagcgcgcgatccgcgatatctataacaaggatatcgacgaggtg
atcgtcgagggcgatgacggctatcgccaggccaaggacttcatgaagctcctgatgccg
agccacgccaagaaggtgaagcattacagcgacgccgtgccgctgttccagcgcgccggg
gtcgaggagcaattgtcggcaatgtaccacccggtggtgcagctcaagtccggcggctat
ctcgtcatcaatccgaccgaggcgctggtgtcgatcgacatcaactccggccgatcgact
cgcgagcattcgatcgagcagacggcgaccgccaccaaccttgaggccgcgcaggaaatc
gcgcgccagttgcggctgcgcgacatggccggccttgtcgtcatcgacttcatcgacatg
gaccactcgtccaacgtccgaaaggtcgagaaggcgatgaaggaggcgctgaagaacgat
cgcgcccgcatccaggtcggccggatcagcgcgttcgggctgatggaaatgagccgccag
cggctgcgcaccggggtgctcgaagcgtcgacgcgccagtgcccgcattgcgagggcacc
gggctggtccgcaccgcatcgtcggcggggctcagcgcgctgcgcatgatcgaggacgag
gccgcacgcggccgcgggtcgcacatcacgctgcggtgcagccaggaagcggccttctac
gtcctcaacaacaagcgcgccgacatcgccgagatcgaggatcgttatggggtgagggtc
gaaatcctctccgacggcgagctggaaggcgcgcgcatgtcggtagaagcgagcggcccg
ccgccgctgcacgcgcccaaattcgctgccgcgatcgaagaggtcgaggaggatgtcgtc
gaggagatcgacgaggaggaagaggacgaagaggtcgaggcacgcgcgccgcgcgaacgt
cgcgagcgtgacgagggcgacagcgaggccgggcgcaagcgccgccgccgccgccgtggc
cgtcgcaatcgtcgtgacgacgaatcggacgcgccgcgcgacgacgccgccgaggccgaa
tcggatggcgcagacaatgccgagggcgaggaggaggccgcgaacgcggccgagaccgtg
gcttcggacgagaatggcgagccgcgcaagcgccgccgtcgtggtcgccgtggcggtcgc
cgtggtgccggagagggcgagggcgcagaggaaaccgccgaggcggcagaaccggaagtc
cagcccgagccggttgcggacgcggttgacgcggccccggccaagcccaagcgcagccgt
cgcaagaaagccgatgtcgaggccgaggcggcgcccgctgccgacgccgatgccgctggc
accgatggcgttcgggccgaggcggtgagcgaagaggctcctgcggaggcggaagctccg
gccaagccgaagcggactcgccgcaaaaaggccgatacggacgcggcaccggccatggcc
gagacggcggcggtggaaaccgtggctgctgaggctcccgctgagaccccggtcgctgag
gaagcgcctgccaagccgaaacggacgcgtcgcaagaaggtcgatgccgaacccgttgcc
gcagagcagccggttgcggtcgaagccgtcagccaggaccttgcagcgcccgctgccgta
tctgcgtcacccgaaaggtcggagggcgagacggccggaggcgatgaagaaagcggatct
ccgcgccgcggctggtggcagcgcaccttcggcgcctga
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