Sphingomonas suaedae: FPZ54_18720
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Entry
FPZ54_18720 CDS
T07976
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ssua
Sphingomonas suaedae
Brite
KEGG Orthology (KO) [BR:
ssua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssua03032
]
FPZ54_18720
03400 DNA repair and recombination proteins [BR:
ssua03400
]
FPZ54_18720
Enzymes [BR:
ssua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FPZ54_18720
DNA replication proteins [BR:
ssua03032
]
Prokaryotic type
DNA Topoisomerases
FPZ54_18720
DNA repair and recombination proteins [BR:
ssua03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FPZ54_18720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Tsr0524-like
Motif
Other DBs
NCBI-ProteinID:
QDX27843
UniProt:
A0A518RK77
LinkDB
All DBs
Position
complement(3960092..3961099)
Genome browser
AA seq
335 aa
AA seq
DB search
MSKRLRFCDDGAPGITRRLIRGKWGYWDAKGKRITDRDEIDRLNAVGLPPAYRDAWFCPH
PNGHLQATGIDDRGRKQYRYHPEFRAAQEAAKYDRCADFGHRLPRLRARIEADLRKRALS
RERAVAAVVRLLDLGHVRIGNEGYAKANKSFGATTLRKRHATLSGRSLKLQYRAKSGKIR
ELRITDGSLIGFVKKCQDLPGQHLFGWLDEAGEAHPVTSTDVNLYIREAMGADFTAKHFR
TWGASVIAFETLAGADGYVGLKTMLEPVTRALGNTPAIARKSYVHPDLIALTKDRAAQEL
FRETLCLPRTTHYLTRAERGLIAFLESGGITAKAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagagactgcgattttgcgacgatggcgcaccggggatcacccgtcgcctcatt
cgcggcaaatggggttattgggatgcgaagggaaagcgcatcaccgatcgcgacgagatc
gaccggctgaacgccgtcggcttgcctccagcctatcgcgacgcctggttctgcccgcac
ccaaatggccacctccaggcgaccggcatcgacgatcgcgggcgcaagcaatatcgctac
caccccgagttccgcgccgcgcaggaggccgccaaatatgatcgctgcgccgacttcggc
caccgcctgcccaggctgcgcgcccggatcgaggccgatctgcgcaagcgcgcactgagc
cgcgagcgcgcggttgccgcggtcgtgcggttgctcgatctcggccatgtccgcatcggc
aacgaaggctatgcaaaggcgaacaagagcttcggcgcgacgacgctgcgcaagcgtcat
gcgacgctgagcggccggtcgctcaagcttcagtatcgcgcgaagtccggcaagatccgc
gaattgcggattaccgacggcagtctgatcggtttcgtcaaaaagtgccaggacctgccc
ggccagcatctgttcggctggctcgatgaggcgggggaggcgcatcccgtgacatcgacc
gacgtcaacctttacatccgcgaagcgatgggcgccgatttcactgccaagcatttccgc
acctggggcgcgagcgtgatcgcgttcgagacgctggccggtgcggacggatatgtcggg
ctgaagacgatgctcgaacctgtaacgcgggcgttgggcaacacacccgccatcgcgcgc
aaatcctatgttcaccccgacctgatcgccctgaccaaggatcgtgcagcgcaggagctg
ttccgcgagacgctgtgcttgccccgcacgacccattatctgacccgcgccgagcggggg
ctgatcgcctttctcgagagcggcgggattaccgccaaagctgcctga
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