Streptomyces subrutilus: CP968_17940
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Entry
CP968_17940 CDS
T07087
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ssub
Streptomyces subrutilus
Brite
KEGG Orthology (KO) [BR:
ssub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssub03019
]
CP968_17940 (hrpA)
Enzymes [BR:
ssub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CP968_17940 (hrpA)
Messenger RNA biogenesis [BR:
ssub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CP968_17940 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
SLFN-g3_helicase
nSTAND3
T2SSE
AAA_16
ResIII
AAA_30
NACHT
PhoH
NTPase_1
TsaE
AAA_25
DUF6139
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QEU79955
UniProt:
A0A5P2UNT5
LinkDB
All DBs
Position
complement(4068877..4072800)
Genome browser
AA seq
1307 aa
AA seq
DB search
MSTSFAALQTLLGEISLRDAHRLGRRLEGARRIRKTEARQAVLDEIAAEATKAAARLAGR
ASRKPEVTYPENLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGM
IGHTQPRRIAARTVAERIAEELKSEIGRTVGWKVRFTDQVDQDETFVKLMTDGILLAEIQ
TDRELRAYDTIIIDEAHERSLNIDFLLGYLATLLPRRPDLKVIITSATIDPERFSRHFGD
APIVEVSGRTYPVEVRYRPLLEEDSEDSDRDQITAICEAVDELQSEGPGDVLVFLSGERE
IRDTADALNKRNLRFTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSLTVPGIKY
VIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICVRLYSEDDFLSRPE
FTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALDPAEKDH
SKRLTPMGRQLSQLPVDPRLARMVVEADKNNCVREVMVIAAALSIQDPRERPSDKQTQAD
QHHARFKDETSDFLAFLNMWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIYAQLR
SVARTMGLHVNEADAPEQVVHVSLLAGLLSHIGLKDTDKNEYLGARGAKFAVFPGSALFK
KQPKFLMSAELVETSRLWARVNAKVEPEWVEPLAQHLVKRTYSEPHWEKDQAAVMAYEKV
TLYGVPIVAQRKINYGRIDPEVSRELFIRNALVEGDWRTHHKFYADNRRLLTEVEELENR
ARRRDIVVDDETLFDFYDQKIPAHVVSGAHFDSWWKHKKREEPELLDFEREMLLTEKAAG
VTKADYPDTWRQGQLSFRVTYQFEPGADADGVTVHVPLQVLNQVTDEGFDWQIPGLREEV
VTELIRSLPKPVRRHYVPAPNFAGRFLATAAPLQEPLHVTLARELQRMVGVPVAPEDFDL
TRVPDHLKITFRIVDERRRNLAEDKDLEALRLRLKPKARQALSKAAAATAERAGGESVER
SGLTDWTIGTLTRIFETRRAGQPVKAYPALVDGGTTVSVRLFDTEAEQRQAMWLGTRRLI
LLNIPVNPAKFASDHLTNQQKLALSRNPHGSIQALFDDCATAAADKLIADHGGPAWDEAG
FRALYEAVRADLVDTTVRTVQQVQQVLAAWQACERRLKGTNSLALAANVQDVRTQLAALV
PAGFVTLTGLRRLGDLMRYLVAADRRLQQMPTGVQRDTTRMQKVHEMQDEYAWLLEQLPK
GRPVPEAVTDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAVDAAAP
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgccctgcagacgcttctcggtgagatctccctccgcgacgcg
caccgcctcggccgccgcctcgaaggcgcccgccgaatccgcaagaccgaggcccggcag
gccgtgctcgacgagatcgccgcggaggccacgaaggccgccgcgcgactggccggccgt
gcctcgcgcaagcccgaggtcacctatcccgagaacctgcccgtcagccagaagaaggac
gagatcgccgaggcgatacgcgaccaccaggtcgtgatcgtcgcgggcgagaccggctcc
ggcaagaccacgcagatccccaagatctgcatggagctgggccgcggcgtccggggcatg
atcgggcacacccagccccgccggatcgcggcccgcacggtcgcggagcgcatcgcggag
gagctgaagtccgagatcggccggacggtcggctggaaggtccggttcaccgaccaggtg
gaccaggacgagaccttcgtgaagctgatgaccgacggcatcctgctcgccgagatccag
acggaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcgcacgaacggtcg
ctgaacatcgacttcctgctcggctacctcgccacgctgctgccccggcgccccgacctc
aaggtgatcatcacctcggcgacgatcgaccccgagcggttctcccgccacttcggcgac
gcgccgatcgtcgaggtcagcgggcggacgtaccccgtcgaggtccgctaccggccgctg
ctggaggaggactccgaggacagcgaccgggaccagatcacggcgatctgcgaggcggtg
gacgagctccagtcggagggtccgggcgacgtcctggtcttcctctccggcgagcgggag
atccgggacacggcggacgccctgaacaagcggaacctgcgcttcaccgaagtcctcccc
ctgtacgcgcggctctcccacgccgagcagcaccgggtcttccagcagcacaccgggcgc
cggatcgtcctggcgaccaacgtcgccgagacctcgctgaccgtcccgggcatcaagtac
gtgatcgacccgggcaccgcccggatctcgcgctacagccaccgcaccaaggtgcagcgc
ctgcccatcgagccggtctcgcaggccagcgccaaccagcgcaagggccgctgcggccgt
accagcgacggcatctgcgtccggctgtactccgaggacgacttcctctcccgcccggag
ttcacggacgccgagatcctgcgcaccaacctcgcctccgtcatcctccagatgaccgcg
gccgggctcggcgagatcgagaagttccccttcatcgacccgccggaccaccgcaacatc
cgcgacggcgtccagctcctccaggagctcggggcgctggacccggcggagaaggaccac
agcaagcggctcacgcccatgggccgccagctctcccagctgcccgtggacccgcggctc
gcccgcatggtggtggaggccgacaagaacaactgcgtccgcgaggtcatggtcatcgcg
gccgcgctgtccatccaggacccgcgcgagcgtccctcggacaagcagacccaggccgac
cagcaccacgcccgcttcaaggacgagaccagcgacttcctggccttcctgaacatgtgg
cgctacgtccgggagcagcagaaggagcgcggctcctcctcgttccgccggatgtgcaag
caggagtacctgaacttcctgcgcatccgcgagtggcaggacatctacgcgcagctgcgc
tcggtggcccggacgatgggcctgcacgtcaacgaggccgacgcccccgagcaggtcgtg
cacgtctcgctgctggccggcctgctctcgcacatcgggctgaaggacaccgacaagaac
gagtacctcggcgcgcgcggggcgaagttcgccgtcttccccggttcggcgctgttcaag
aagcagccgaagttcctgatgtcggcggagctggtggagacctcgcggctgtgggcccgg
gtcaacgccaaggtggagccggagtgggtcgagccgctcgcgcagcacctggtcaagcgg
acgtacagcgagccgcactgggagaaggaccaggcggcggtgatggcgtacgagaaggtg
acgctgtacggcgtgccgatcgtcgcccagcggaagatcaactacggcaggatcgacccc
gaggtctcgcgcgagctgttcatccgcaacgcgctggtcgagggcgactggcggacccac
cacaagttctacgcggacaaccgcagactcctgaccgaggtggaggagctggagaaccgg
gcccggcgccgcgacatcgtggtggacgacgagaccctcttcgacttctacgaccagaag
atccccgcgcacgtggtgtccggggcgcacttcgactcctggtggaagcacaagaagcgc
gaggagcccgaactcctcgacttcgagcgcgagatgctgctgaccgagaaggcggccggg
gtcaccaaggccgactacccggacacgtggcggcagggccagctgtcgttccgggtgacc
taccagttcgagcccggcgcggacgccgacggcgtgaccgtccacgtcccgctccaggtg
ctgaaccaggtcaccgacgaaggcttcgactggcagatcccggggctgcgcgaggaggtc
gtcaccgagctgatccgctcgctgccgaagccggtgcggcgccactacgtgccggcgccg
aacttcgcgggccggttcctggcgacggccgcgccgctgcaggagccgctgcacgtgacg
ctggcgcgcgagctccagcggatggtcggggtcccggtggcgcccgaggacttcgacctg
acccgggtcccggaccacctgaagatcaccttccggatcgtcgacgagcggcgccgcaac
ctcgccgaggacaaggacctggaggccctgcggctgcgcctgaagcccaaggcccgccag
gcgctctccaaggccgccgcggccaccgcggagcgggcgggcggggagtcggtggagcgc
tccggcctgacggactggaccatcggcaccctgacccggatcttcgagacccggcgcgcg
ggccagccggtgaaggcgtacccggcgctggtggacgggggcacgaccgtctcggtacgg
ctcttcgacaccgaggccgagcagcggcaggcgatgtggctgggcacccggcgcctcatc
ctgctgaacatcccggtgaatccggcgaagttcgcctcggaccacctgaccaaccagcag
aagctggccctgtcccgcaatccgcacggctccatccaggccctgttcgacgactgcgcg
acggcggcggccgacaagctgatcgccgaccacggcggtccggcgtgggacgaggcgggc
ttccgcgcgctctacgaggccgtgcgggccgacctggtggacacgaccgtgcgcaccgtg
cagcaggtgcagcaggtgctggccgcctggcaggcctgcgagcggcggctgaagggcacc
aacagcctcgccctggccgccaacgtccaggacgtccggacgcagctggcggcgctggtg
ccggccgggttcgtcacgctgaccgggctgcggcggctgggggacctgatgcgctacctg
gtggccgcggaccgcaggctccagcagatgccgaccggcgtgcagcgcgacaccacgcgg
atgcagaaggtccacgagatgcaggacgagtacgcctggctgctggagcagttgccgaag
gggcggccggtccccgaggcggtcaccgacatccgctggatgatcgaggaactgcgcgtc
agctacttcgcccacgcgctcggcacggcgtacccggtgtccgacaagcggatcgtgaag
gcggtggacgcggctgccccgtga
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