Staphylococcus succinus: ACSSAF_11590
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Entry
ACSSAF_11590 CDS
T11224
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssuc Staphylococcus succinus
Pathway
ssuc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssuc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACSSAF_11590 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssuc03021
]
ACSSAF_11590 (rpoC)
03400 DNA repair and recombination proteins [BR:
ssuc03400
]
ACSSAF_11590 (rpoC)
Enzymes [BR:
ssuc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACSSAF_11590 (rpoC)
Transcription machinery [BR:
ssuc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACSSAF_11590 (rpoC)
DNA repair and recombination proteins [BR:
ssuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACSSAF_11590 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
XXR31382
LinkDB
All DBs
Position
complement(2352522..2356118)
Genome browser
AA seq
1198 aa
AA seq
DB search
MKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECSCGKYKRVR
YKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDMSPRALEEVI
YFASYVVVKPGPTGLEQKTLLSEAEFRDYYDKFPGQFTAKMGAEGIKELLEEIDLDAELK
SLRDELESATGQRLTRAIKRLEVVESFRHSGNNPAWMILDVLPIIPPEIRPMVQLDGGRF
ATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKEMALELFKPF
IMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVIREHPVLLNRAPTLHRLGIQAFEPT
LVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNILNPKDGKPVV
TPSQDMVLGNYYLTLERKDSVNTGTIYNDTNEVLKAYANGYVHLHSRIGVHAGSFNNPTF
TEEQNKKILLTSVGKVIFNEIIPDSFAYINEPTQANLEGVTPDKYFVTATELGEDGLKAY
FDQAPLIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGITVGVSDIVV
LPDKKDILDEHEKIVDNITKQFNRGLITEFERYNAVVETWTAAKDQIQGELMQSLDKTNP
IFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEYFISTHGARK
GLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMIEPFIERIEG
RYSKETVRHPETDEIIIKPDELITAEIAKQITDAGFEQMYIRSAFTCNTRHGVCEKCYGK
NLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIFEARNP
KGQAVITEIEGVVDDIKLAKDRQQEIVIKGANESRSYLASGTSRLKVEIGQSVERGEVLT
EGSIEPKNYLSVSGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGD
TKLLPGSLVDIHNFTDANREAFKERKRPATAKPVLLGITKASLETESFLSAASFQETTRV
LTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVKYDKKAPEQTVTEEVQTTEV
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataggacttgcttcacctgaaaaaatccgttcatggtcttttggtgaggttaaa
aagccagaaacaattaactatcgtactttaaaaccagaaaaagatggtcttttctgtgaa
agaatattcggacctacaaaagattgggaatgtagttgtggtaaatacaaacgtgtacgt
tataaaggtatggtttgtgacagatgtggagttgaggtaactaaatctaaagtgcgccgt
gaaagaatgggacacattgaattagctgcaccagtatcacacatttggtacttcaaaggt
attccaagtcgtatgggtctattattagatatgtctccaagagcattagaagaagttatt
tatttcgcttcttatgttgttgttaagccaggtccaactggattagaacaaaagacattg
ttatctgaagcagaattcagagactattacgacaagttcccaggccaatttacggctaaa
atgggtgctgaaggtattaaagaattacttgaagaaatagacttagatgctgaacttaaa
tcactacgtgatgagttagagtcagcgacaggtcaaagacttactcgtgcaatcaaacgt
ttagaggtagttgagtcattcagacattctggaaataatccagcgtggatgattttagat
gtacttccaattatcccacctgaaatcagaccaatggttcaattagatggtggacgtttt
gctacaagtgatttaaatgatttatatcgtcgtgttattaaccgtaacaatcgtttaaaa
cgtttattagacttaggtgctcctggcatcatagttcaaaatgaaaaacgtatgttacaa
gaagctgttgatgcacttatcgataatggtcgtcgtggccgtccggtaacaggaccaggt
aaccgtccgttaaaatcactttcacatatgttaaaaggtaaacaaggacgtttccgtcaa
aacttattaggtaaacgtgttgactactcaggtcgttcagttattgcagttggaccgagc
ttgaaaatgtatcaatgtggtctacctaaagaaatggcgcttgaattgttcaaacctttc
attatgaaagaacttgtacaacgtgaaattgctactaacattaaaaatgctaagagtaag
atagagcgtatggatgatgaagtttgggatgtattagaagatgttattcgtgagcaccca
gtacttttaaaccgtgcacctacacttcacagattaggtatccaagcatttgaaccaaca
ttagttgaagggcgtgcaatacgtctacatccacttgtaacaacagcttacaacgcggac
tttgatggtgaccaaatggctgtccatgtaccgttatctaaagaagcgcaagctgaagca
cgtatgttaatgttagctgcacaaaacatcttgaaccctaaagatggtaaaccagttgtt
acaccatcacaagatatggtacttggtaactattaccttactttagagcgtaaagattca
gtcaatactggtacaatttacaatgatacgaacgaagtattaaaagcttatgccaatggt
tatgttcacttacattctcgtattggtgttcatgctggttcattcaacaatccaacgttc
actgaagagcaaaacaaaaagatcttattaacttctgttggtaaagtgatattcaatgaa
atcattccagattcatttgcttatattaacgaaccaactcaagctaatttagaaggcgta
acacctgataaatattttgttactgctactgaacttggggaagatggattgaaagcctac
ttcgatcaagcgccgttaattgaaccatttaataaaaaattcttaggtaatatcattgct
gaagtatttaaccgtttcagcattacagatacttctatgatgttagacagaatgaaagac
ttaggtttcaaattctcatctaaagcaggtatcactgttggtgtatctgatatcgtggtt
ttaccagataaaaaagatatcttagatgaacatgaaaaaattgttgataatataactaaa
caatttaaccgtggtttaatcactgaatttgaacgttataacgcagtagttgaaacttgg
acagctgctaaagatcaaattcaaggtgaattaatgcaatcacttgataaaaccaaccca
atctttatgatgagtgattccggtgcccgtggtaacgcatctaactttacacagttagct
ggtatgcgtggactaatggcagcaccatcaggtaagattatagaattaccaatcacatct
tctttccgtgaaggtttaacggtattagagtacttcatctctacccatggtgcgcgtaaa
ggacttgccgatacagcacttaaaactgccgattctggttaccttactcgtcgtcttgtt
gatgttgcacaagatgttatcgtacgtgaagaagattgtggaactgaccgtggtttatta
gtttctgatatcaaagagggcacagaaatgattgagccatttatcgagcgtatcgaaggt
cgttattctaaagaaacagttcgtcatccagaaactgatgaaattatcatcaaaccagat
gaattaattactgcagaaatagcgaaacaaattacggatgctggttttgaacaaatgtat
atccgctcagcatttacatgtaatacacgtcatggtgtatgtgaaaaatgttatggtaaa
aaccttgcaactggtgaaaaagttgaagttggtgaagcagttggtacaattgctgcccaa
tcaattggtgaaccaggtacacagcttacaatgcgtacattccatacaggtggtgtagca
ggtagtgatatcacacaaggtcttccacgtatccaagagattttcgaagcacgtaaccct
aaaggtcaagcagtgattactgaaatcgaaggtgtcgtagatgacatcaaacttgcgaaa
gaccgtcaacaagaaatcgtaattaaaggtgcaaatgaatcaagatcataccttgcttca
ggtacatcaagattgaaagttgaaattggtcaaagcgttgaacgcggtgaagttctaact
gaaggttctatcgagcctaagaactatttatctgtttcaggtttgaatgcaacagaaagt
tatttactaaaagaagtacaaaaagtttaccgtatgcaaggtgtagaaattgatgataaa
cacgttgaggttatggtaagacaaatgttacgtaaagtacgtatcattgaagctggagat
actaagttacttccaggttcattagtagatattcataactttactgatgcaaaccgtgaa
gcatttaaagagcgtaaacgccctgcaacagctaaaccagtattattaggtattacaaaa
gcgtctcttgaaacagaaagtttcttatcagcagcttcgttccaagaaacaacacgtgta
cttactgatgctgcaattaaaggtaagcgtgatgacttactcggtcttaaagagaatgtt
atcatcggtaaattaattccagctggtactggtatgagacgttatagcgacgttaaatac
gataaaaaagcacctgaacaaacagttactgaagaagttcaaacaactgaagtataa
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