Staphylococcus succinus: ACSSAF_11880
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Entry
ACSSAF_11880 CDS
T11224
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssuc Staphylococcus succinus
Pathway
ssuc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACSSAF_11880 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssuc03400
]
ACSSAF_11880 (mfd)
Enzymes [BR:
ssuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACSSAF_11880 (mfd)
DNA repair and recombination proteins [BR:
ssuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACSSAF_11880 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XXR31385
LinkDB
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Position
complement(2409434..2412937)
Genome browser
AA seq
1167 aa
AA seq
DB search
MITEYINGDKRYQELDAVFGKENVLVTGLSSAAKATIISEKFLHTSKQLLVVTNNLYQAD
KLESDLSQFVEAEDIYKYPMQDIMTEEFSTQSPQFMSERVRTLTALAQEKRGLFIVPLNG
LKKWLTPVEMWKSHQLSLSVGDDIDTDTLLNKLVNMGYRRESVVSHIGEFSLRGGIIDIY
PLIGKPVRIELFDTEVDSIRDFDVETQRSEGNIDSVNITTASDYIITDNVLKHTKLKLKE
AYEHTRPKIDKSVRQELKETYDSFQLYESSILDHQVLRRLVAFMYEQPATIIDYFKNDAI
VAIDEYNRVKESEASLLTEADDFIQNLIESGKGFIGQSFLQYDGFETLLKSHPLTYFTLF
TATMPVQLNEIIKFSCKPVQQFYGQYDIMRSEFQRYIQNDYTVVVLAETEVKKERIQEML
NEMHIPTFIDTPSHRSNGGSAIITEGSLSEGFELPYMQLVVVTERELFKSKQKKKPKQQK
ALTNAEKIKSYQDLKVGDYVVHVHHGVSRYLGVETLEVSGVHKDYIKLQYKGTDQLFVPV
DQMDQVQKYVASEDKSPKLNKLGGTDWKKTKAKVQQSVEDIADELIDLYKEREMSVGYKY
GPDTAEQNDFELDFPYELTPDQSKSIDEIKQDMEIERPMDRLLCGDVGYGKTEVAVRAAF
KAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPIEVQLISRFRTTKEVKETKEGLKSGF
VDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKSLKTNVDVLTLTATPIPRTL
HMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALEREVSREGQVFYLYNKVQSIY
EKREQLQMLMPDANIGVAHGQMSEGDLEETMLGFINHEYDILVTTTIIETGVDVPNANTL
IIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLTETAEDRLQAIKEFTELGSGF
KIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGVTVETEDAPEVEIEL
NIDAYLPAEYIQNEQAKIEIYKKLRKIETQDQLMDIKDELIDRFNGYPVEVERLLDMMEI
KVHALHAGVTAIKDVNKQVEIYLSEKGTTDINGETLFKQTQPLGRTMKVGVQDGKMKLTL
NKTGAWLDNLKFLAKCLEESMVIVDEF
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
ataattacagaatatataaatggagataagcgttatcaagaattagacgcagtatttggc
aaagagaatgttttagtaactgggttgtcttcggcggctaaggcaacgattatatctgaa
aagtttttgcatacttcaaagcaattattagttgtgactaataatttatatcaagcagac
aagttggaaagtgatttatcacaatttgtagaggcagaagatatatataaatatccaatg
caagatatcatgactgaagaattttcaacgcaaagccctcaatttatgagtgagcgtgta
cgtacactgacggcacttgctcaagaaaagagagggttatttatcgtaccattaaatggc
ctgaaaaaatggcttacacctgtagaaatgtggaaatcccatcaattgtcattatcagta
ggtgacgatattgatacggataccctattaaacaaactggtaaatatgggatatcgtaga
gaaagtgtcgtttcacacataggagaattttcattaagaggtggaattatagatatctat
ccacttattggtaaaccagtaagaattgaattatttgatactgaagtagattcaatacgt
gattttgatgtggaaacccaaaggtcagagggaaatatagattcggtaaatataactaca
gctagtgattatattattactgataatgtcttaaaacatacaaagttaaaacttaaagaa
gcatatgaacatacacgccctaaaatagataaatccgttcgtcaggaattaaaagaaact
tatgatagtttccaactctatgaatcatcaatattagaccatcaagttttgcgtcgccta
gtggcatttatgtatgaacaaccagctacaattatagattattttaaaaatgatgctatc
gtagcgattgatgaatataatagagttaaagaaagcgaagcgtcacttttaacggaagcg
gatgactttatacagaatttaatagaaagtggtaagggatttatcgggcaaagtttttta
caatatgatggattcgagacattactcaaatcccacccactaacttatttcacattattt
acagcaactatgccggttcaattaaatgaaattattaaattttcgtgtaaacctgtacaa
caattttatgggcaatatgatattatgcgttcggaatttcagcgctatattcagaatgat
tatacagtagtagtcttagcagaaactgaagtgaaaaaagaacgtatacaagagatgcta
aatgaaatgcatataccgacatttatcgataccccaagtcatcgtagcaatggcggaagt
gcgattattacagaaggtagtttgtctgaaggttttgaattgccttatatgcaacttgtt
gtcgttacagaacgtgaactttttaaatctaagcagaagaaaaagccaaaacagcaaaaa
gcactcacaaatgctgagaagattaagtcttatcaggatttaaaagttggagattatgtt
gtacatgtccatcatggtgtgagtagatatttaggggtcgaaactttagaagtaagtggc
gttcataaagattatatcaaattgcaatacaaaggtactgatcaattatttgtacctgta
gatcaaatggatcaagtgcagaaatatgtggcctcagaagataaatcaccaaaattaaac
aaacttggtggtacagattggaaaaaaacgaaagctaaagtacaacaaagtgttgaggac
attgcagatgaacttattgatttatataaagagcgtgaaatgtctgttggttataagtat
ggaccagatacggccgaacaaaatgattttgaattggatttcccatatgaactaacacct
gaccaaagtaaatccattgatgaaattaaacaggatatggaaatagaacgtccaatggat
agattgttatgtggtgacgttggttatggcaagacagaagtggctgttcgagctgcattt
aaagctgtaatggaaggtaagcaagttgctttcttagttccaacgacaattcttgcccaa
cagcattacgaaacattaatagagcgcatgcaagattttccaattgaagttcaactgata
agtcgctttagaacgactaaagaagttaaagagacaaaagaaggtttgaaatcaggcttt
gttgatattgtagtaggtacacataaattacttggcaaagacatccactataaagattta
ggtctacttattgtggatgaagaacagcgttttggtgtccgtcataaagaaagaattaaa
tcacttaaaacaaatgtggatgtcttgacgttgacagcgacccctattccccgcacattg
catatgagtatgttaggcgtacgtgatttatctgttattgaaacaccgccagaaaatcga
tttccagtacaaacctatgtgttagaacaaaatactaactttataaaagaagcgctcgaa
agagaagtatcacgagaaggacaagttttttatctgtataataaagtgcagtctatatat
gagaaacgtgaacagttacaaatgttaatgcctgatgctaacattggcgtagcacacggg
caaatgagtgagggcgatctagaggaaacgatgctaggatttatcaatcatgaatacgat
attcttgtaacgaccactatcattgaaacgggggtagatgtccctaatgcaaacacgctt
atcattgaagatgcagatcgttttggacttagccaactgtatcaattgagaggacgcgta
ggtcgttctagtcgtatcggctatgcatatttcttgcatccaactaataaagtattgact
gaaactgcagaagatcgtttgcaagcaattaaagaattcactgaattaggttcaggattt
aaaattgctatgagagatttgaatattcgtggcgcgggtaatctattaggaaagcagcaa
catggatttatcgactctgttggttttgatttatactctcaaatgcttgaagaagcagtt
aatgaaaaacgtggtgtaacagtagaaactgaagatgcgcccgaagtcgaaatagaactt
aatatcgatgcttatttaccagctgaatatattcaaaatgaacaagcgaaaattgaaatt
tataaaaaattacgtaaaatcgagacacaagatcaactgatggatatcaaagatgaatta
atagatcgtttcaatggttatcctgtagaagttgagagattgttagatatgatggaaatt
aaagtacatgcattacatgcgggtgtcactgcaattaaagatgttaataaacaagtagaa
atttatttatctgaaaaaggaacgacagatattaatggagaaacattgttcaaacaaacg
caaccacttggtcgtacaatgaaagttggcgtacaagatggtaaaatgaaattaacatta
aataaaacaggtgcatggttggataatttgaaatttttagctaaatgtttagaagaaagt
atggttatagtagatgaattctaa
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