KEGG   Shinella sumterensis: Q9314_00610
Entry
Q9314_00610       CDS       T09417                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K13599  two-component system, NtrC family, nitrogen regulation response regulator NtrX
Organism
ssum  Shinella sumterensis
Pathway
ssum02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ssum00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Q9314_00610
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:ssum02022]
    Q9314_00610
Two-component system [BR:ssum02022]
 NtrC family
  NtrY-NtrX (nitrogen regulation)
   Q9314_00610
SSDB
Motif
Pfam: Sigma54_activat Response_reg AAA_lid_14 Sigma54_activ_2 HTH_8 AAA_5 AAA_2 Mg_chelatase AAA P-loop_TraG ABC_tran MCM FleQ nSTAND3
Other DBs
NCBI-ProteinID: WLS08321
LinkDB
Position
120177..121541
AA seq 454 aa
MASDILVVDDEEDIREIVSGILSDEGHETRTAFDSDSALAAISDRVPRLVFLDIWMQGSK
LDGLALLDEIKSRHPDLPVVMISGHGNIETAVSAIRRGAYDFIEKPFKADRLILIAERAL
ENSKLRREVTELKKRSGDPVELIGTSVAVSQLRQNIEKVSPTNSRIMILGPSGSGKELVA
RMIHRKSSRANGPFVVLNAAAITPERMEIALFGTEGTPGQPRRTGVLEEAHGGILYLDEI
GEMPRETQNKILRVLVDQQFERVGGSKRVKVDVRIISSTAYNLESLIAEGGFREDLYHRL
AVVPLRVPPLAERREDIPFLVDMFMRQVSEQAGIRARKIGDDALAVLQAHDWPGNIRQLR
NNIERLMILARSDGPDTPISADMLPTEVGDMLPKISTQGDQHIMTLPLREAREMFERDYL
IAQINRFGGNISRTAEFVGMERSALHRKLKSLGV
NT seq 1365 nt   +upstreamnt  +downstreamnt
atggcgtctgatattctcgtagtggacgacgaagaggacatccgcgaaatcgtttccggc
atcctgtcggacgaggggcatgagacccgcaccgccttcgacagcgacagcgcgctcgcc
gccatcagcgaccgcgtgccgcgcctcgtcttcctcgacatctggatgcagggcagcaag
ctcgacgggcttgcgcttctcgacgagatcaagagccgccatcccgacctgccggtcgtg
atgatttcgggccacggcaatatcgagaccgccgtctcggccatcaggcgcggcgcctac
gatttcatcgaaaagcctttcaaggcggaccggttgatcctgattgcggaacgggctctg
gagaactccaagcttcgccgcgaggtgacggagctgaagaagcggtcgggcgatcccgtc
gagctgatcggcacgtccgtcgccgtctcgcagctgcgccagaacatcgagaaggtttct
ccgaccaacagccgcatcatgatcctcggcccctccggctccggtaaggaactggtagcg
cgcatgatccaccgcaagtcgagccgggcgaacgggccgttcgtcgtcctgaacgcggcg
gccatcacgccggagcgcatggagatcgcgctcttcgggaccgagggaacgcccggccag
ccgcgccggaccggcgtgctggaagaggcgcatggtggcatcctctatctcgacgagatc
ggcgaaatgccgcgcgagacgcagaacaagatcctgcgcgtgctggttgaccagcagttc
gagcgcgtcggcggctccaagcgggtcaaggtcgatgtgcgcatcatctcgtccaccgcc
tacaatctcgaaagcctgatcgccgaaggcggtttccgtgaggacctctatcaccggctg
gccgtcgtgccgctgcgcgtgccgccgctcgcggaacggcgcgaggacattcccttcctc
gtcgacatgttcatgcgccaggtcagcgagcaggccggcatccgcgcccgcaagatcggc
gacgatgcgctggcggtgctccaggcgcacgactggccgggcaatatccgccagctgcgc
aacaatatcgagcgtctgatgatcctcgcccgaagcgacggcccggatacgccgatctcg
gccgacatgctgccgacggaagtgggcgacatgctgccgaagatttccacgcagggcgac
cagcacatcatgacgctgccgctgcgcgaggcgcgcgaaatgttcgaacgcgactacctg
atcgcccagatcaaccgcttcggcggcaatatctcccgcacggccgaattcgtcggcatg
gagcgctcggcgctccatcgcaaactgaaatcgcttggcgtataa

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