KEGG   Shinella sumterensis: Q9314_10615
Entry
Q9314_10615       CDS       T09417                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ssum  Shinella sumterensis
Pathway
ssum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Q9314_10615 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssum03021]
    Q9314_10615 (rho)
   03019 Messenger RNA biogenesis [BR:ssum03019]
    Q9314_10615 (rho)
Transcription machinery [BR:ssum03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Q9314_10615 (rho)
Messenger RNA biogenesis [BR:ssum03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Q9314_10615 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB AAA_25 S1CSD-TOTE-2 NACHT DUF6360 AAA Fungal_virus_P2_C
Other DBs
NCBI-ProteinID: WLS06673
LinkDB
Position
2099871..2101136
AA seq 421 aa
MAEMKLQDLKNKTPTDLLAFAESLEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELDIPTSKDLSPRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAT
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNGDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggccgaaatgaagctacaagacctcaagaacaagactccgaccgacctcctagccttt
gccgaatcgctcgaggtcgagaacgcgagcacgatgcgcaagcaggaactgatgtttgcc
atcctcaagatgctggcctcccaggatgtggaaatcatcggtgaaggcgtcgtggaagtg
ctgcaggacggtttcggcttcctgcggtcggccaatgcgaactacctgccgggccctgac
gatatctacatctcgccgtcgcagatccgccgcttctcgctgaagaccggcgatacggtg
gaagggccgatccgcggccccaaggaaggcgagcgctacttcgccctgctcaaggtcaac
acgatcaatttcgacgacccggagaagatccgccacaaggttcatttcgacaacctgacg
ccgctctatccgaacgagcgcttcaagatggaactggacatcccgacgtccaaggacctc
tctccccgcgtcatcgacctcgttgcgccgctcggcaagggccagcgcggcctgatcgtc
gcgccgccgcgcacgggtaagaccgttctgctccagaacatcgcccattcgattaccgcc
aaccatccggaatgttacctcatcgtccttctgatcgacgagcgtccggaagaagtgacg
gacatgcagcgttcggtgaagggcgaagtggtttcctccaccttcgacgaaccggcaacg
cgccacgtccaggtcgcggaaatggtcatcgagaaggccaagcgtctcgtcgaacatggc
cgtgacgtcgtcatcctgcttgattcgatcacccgtctcggccgcgcctacaacacggtc
gttccgtcgtccggcaaggtcctgaccggcggtgtggatgccaatgccctgcagcgcccg
aagcgtttcttcggcgccgcgcgcaatatcgaggagggcggctcgctgacgatcatcgcg
acggcgctgatcgataccggcagccgcatggacgaagtcatcttcgaagagttcaagggc
accggcaactcggaaatcgtgctggatcgcaaggtcgcagacaagcgtatcttcccggcc
atggatatcctcaagtccggtacccgcaaggaagacctgctcgtcccgcgccaggatctt
cagaagatcttcgtgctgcgccgcatcctcgcgccgatgggcaccaccgatgcgatcgag
ttcctcatcgacaagctgaagcagacgaagaacaacggcgatttcttcgactcgatgaac
acctaa

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