Shinella sumterensis: Q9314_12520
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Entry
Q9314_12520 CDS
T09417
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
ssum
Shinella sumterensis
Pathway
ssum00300
Lysine biosynthesis
ssum00470
D-Amino acid metabolism
ssum01100
Metabolic pathways
ssum01110
Biosynthesis of secondary metabolites
ssum01120
Microbial metabolism in diverse environments
ssum01230
Biosynthesis of amino acids
Module
ssum_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ssum00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Q9314_12520 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Q9314_12520 (dapF)
Enzymes [BR:
ssum01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
Q9314_12520 (dapF)
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Paralog
GFIT
Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
WLS07021
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Position
2501333..2502232
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AA seq
299 aa
AA seq
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MTETVEFARMNGLGNMILVVDMRGRPDVVTPAAAIALNADPATRFDQIMAIHDPKVDGTD
AFIDILNCDGTRAQACGNGTRCVVQALAAETGKKAFTFQTVAGILNAVEHADGTISVDMG
KPVFEWDRIPLAEEFYDTSRIELQIGPIDAPVLHSPSVMSMGNPHAIFWVDRDPMSFDLD
RFGPLLENHPMFPEKANITLAQVTSPTTMTTRTWERGAGLTLACGSAACSAGVSGARTGR
TGRTVEITVASSPNRGKLTIEWREDDHVVMTGPAEWEWSGMLNPATGAFRRDDAEAAAL
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaacggtcgaattcgcaaggatgaacgggctgggaaacatgatcctggtcgtg
gacatgcgcgggcgtccggatgtcgtcacgccggcggcggcgatcgcgctcaatgccgat
cccgcgacccgcttcgaccagatcatggcgatccacgatccgaaggtcgacggcaccgat
gccttcatcgatatcctgaattgcgacggcacgcgggcgcaggcctgtggcaacggcaca
cgctgcgtggtgcaggcgctggccgccgagacgggcaagaaggccttcaccttccagacc
gtcgccggcatcctgaacgccgtcgaacacgcggacggcacgatttccgtcgacatgggc
aagccggtcttcgaatgggaccgcattccgctcgccgaggaattctacgatacgagccgg
atcgagctgcagatcgggccgatcgacgctcccgtgctgcattcgccctcggtcatgtcg
atgggcaatccgcatgcgatcttctgggtcgaccgcgatccgatgagcttcgatctcgac
cgtttcggcccgctgctcgaaaaccacccgatgtttccggaaaaggcgaatatcacgctg
gcgcaggtgacctcgccgaccacgatgacgacgcgcacctgggagcgcggcgcggggctg
acgctcgcctgcggctcggccgcctgctcggcgggcgtttcgggcgcgcgcaccggccgc
acgggccgcacggtggagatcaccgtcgccagcagcccgaaccgcggcaagctcaccatc
gaatggcgcgaagacgatcacgtcgtcatgaccggcccggccgaatgggagtggtcgggc
atgcttaatcccgcaaccggcgcgttccgccgggatgacgccgaggcggcggccctttga
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