Shinella sumterensis: Q9314_15920
Help
Entry
Q9314_15920 CDS
T09417
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ssum
Shinella sumterensis
Pathway
ssum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q9314_15920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssum03019
]
Q9314_15920
Enzymes [BR:
ssum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q9314_15920
Messenger RNA biogenesis [BR:
ssum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q9314_15920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WLS07650
LinkDB
All DBs
Position
complement(3193570..3194979)
Genome browser
AA seq
469 aa
AA seq
DB search
MTTFHDLGLSKTIVATLSALGFEKATPIQEKAIPLVLEGSDLIGLAQTGTGKTAAFGLPM
IEKLLADARRPDPRNIRALILAPTRELVNQIADNLRDFVKKTPLRVVTVVGGASINKQSE
MLSRGTDILVATPGRLLDLVARKSVTLTQARYLVLDEADQMLDLGFIHDLRKISKMVPKN
RQTLLFSATMPKLIGELAGEYLVNPKKVEVTPPGKAADKVEQYVHHVPGKDQKAQILRKT
LTDNPDGLSLVFSRTKHGAEKLMKHLDHIGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCTPDEAHLLRD
IEKLMGIQITVASGEAPAVITAGPGGKSRKGRGNGGGRAGQRPARKPFGDGAQAAEGAAP
SGAKRPQHGRPAQKQGERQNRNHGGGNGQGRPQRQGKPRRPEGQRREQA
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
ttgaccacttttcacgacctcggcctctcgaagaccatcgtcgctaccctctccgccctc
ggcttcgaaaaagcgacgccgatccaggaaaaggccattccgctcgtcctcgaaggctcc
gacctgatcggtctcgcccagaccggcaccggcaagacggccgccttcggcctgccgatg
atcgagaagctgctggccgacgcccgccgtcccgacccgcgcaacatccgcgccctcatt
ctcgccccgacccgcgaactggtgaaccagatcgccgacaacctgcgcgatttcgtgaag
aagacgccgctgcgtgtcgtcaccgtcgtcggcggcgcctccatcaacaagcagtcggaa
atgctgtcccgcggcaccgacatcctcgttgccacgcccggccgcctgctcgatctcgtc
gcgcgcaagtcggtgacgctgacgcaggcccgctatctcgtgctcgacgaagccgaccag
atgctggacctcggcttcatccatgacctgcgcaagatttccaagatggtgccgaagaac
cgccagacgctgctcttctcggccaccatgccaaagctgatcggcgaactggccggcgaa
tatctcgtcaacccgaagaaggtcgaagtgacccctccgggcaaggcggccgacaaggtg
gagcagtatgtccaccacgttccgggcaaggaccagaaggcgcagatcctgcgcaagacg
ctcaccgacaatccggatggcctgtcgctggtcttctcgcgcaccaagcatggcgccgag
aagctgatgaagcatctcgaccatatcggcttcaaggccgcgtccatccacggcaacaag
agccagggccagcgcgagcgcgcactcaaggccttccgtgacggcgagatccgcgtcctc
gtggcgaccgacgtcgccgcccgcggcatcgacattcccggcgtcacgcatgtctacaac
tatgacctgccggaagtgccggacgcctatgtccaccgtatcggccgcacggcccgcaac
ggccgcgacggcatcgcgatcgccttctgcacgcccgacgaagcgcacctgctgcgcgat
atcgagaagctgatgggcatccagatcaccgtcgccagcggcgaagctccggccgtcatc
accgccggccccggcggcaagtcgcgcaagggtcgcggcaacggcggcggccgcgccggc
cagcgcccggcccgcaagcccttcggcgatggcgcgcaggcggcggaaggtgcggcccct
tcgggcgcaaagcgtccgcagcacggccgccccgcccagaagcagggcgaacgccagaac
cgcaaccatggcggcggcaacggccagggccgtccgcagcgtcagggcaagccgcgccgg
ccggaaggccagcgccgcgaacaggcctga
DBGET
integrated database retrieval system
