Shinella sumterensis: Q9314_17630
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Entry
Q9314_17630 CDS
T09417
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ssum
Shinella sumterensis
Pathway
ssum03420
Nucleotide excision repair
ssum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q9314_17630
03430 Mismatch repair
Q9314_17630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssum03400
]
Q9314_17630
Enzymes [BR:
ssum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q9314_17630
DNA repair and recombination proteins [BR:
ssum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q9314_17630
MMR (mismatch excision repair)
Other MMR factors
Q9314_17630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
DUF3553
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WLS10161
LinkDB
All DBs
Position
complement(3553745..3556219)
Genome browser
AA seq
824 aa
AA seq
DB search
MMSGYDDIPFFDEDPQLGPNPAAPAPKAGGGSGLGIAARAMAARDANRAPDYLSGLNPEQ
REAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQLLAVTFTNKAAREMKERI
GLLVGGVVEGMPWLGTFHSIGVKLLRRHAELVGLRSDFSILDTDDVVRLIKQLLQAENID
DKRWPAKQFAGMIDGWKNKGLDPAQIPEGDARAFANGKGRELYTAYQNRLKTLNACDFGD
LLLHPIRMFRANPDVLAEYHQKFRYILVDEYQDTNTAQYMWLRLLAQRPKGTPQNVCCVG
DDDQSIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTAHILGAAGHLIAHNEDRLGKT
LFTDRHDPDDDKVVVHAAWDSEEEARAVGEEIEQLQRKQHKLNDMAILVRASFQMREFED
RFVTLGLNYRVIGGPRFYERLEIRDALAYFRLVSQPSDDLAFERIVNTPKRGLGDTTIRN
LHDYARARDIPMLAAAADIIETDELKPKARKALFDVVTDFRRWQSLLETMPHTELAEQIL
DESGYTAMWQADKSAEGPGRLDNLKELIRSMEAFESMRGFLDHVSLVMDAEQNADLDAVS
IMTLHSAKGLEFETVFLPGWEEGLFPHQRSLDEGGRSGLEEERRLAYVGITRAKRRCHIW
FVSNRRIHGLWQSTLPSRFLDELPETHVEVAEVEQSYGGYGRGGGYGQSRFDKQEPFQNA
YSTPGWRRAQANRTDATRDNWGSRSGHAVERVGYGESGPRGRTIEGELIAKSATSEPSKF
AIGDRVFHLKFGNGNVASIEGNKLTIDFDRAGQKRVLDGFVQKA
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcggttacgacgatattcccttcttcgatgaagacccgcagctcggccccaat
ccggccgcacccgccccgaaagcgggcggcgggtcggggctcggcatcgccgcgcgcgcc
atggcggcgcgcgacgccaaccgcgcgcccgattatctctccggcctcaacccggaacag
cgtgaagccgtcgagaccctcgacgggcccgttctggtgctcgccggcgccggtaccggc
aagacgcgggtgctgaccactcgcatcgcccatatcctcgccaccggccgcgcctatccg
agccagcttctcgcggtgaccttcaccaacaaggccgcgcgcgagatgaaggagcgcatc
ggcctgctcgtcggcggagtggtggaaggcatgccgtggctcggcaccttccactccatc
ggcgtgaagctgctgcgccgccatgcggagcttgtcggcctgcgttcggacttctccatt
ctcgacacagacgatgtcgtgaggctgatcaagcagttgctccaggcggagaacatcgac
gacaagcgctggccggccaagcagttcgccggcatgatcgacggctggaagaacaagggc
ctcgatcccgcgcagatcccggaaggcgatgcccgcgccttcgccaacggcaagggccgc
gaactctacaccgcctaccagaaccgcctgaagacgctgaacgcctgcgacttcggcgac
ctgctgctgcacccgatccgcatgttccgcgccaatccggacgtgctggcggagtaccac
cagaaattccgctacatcctcgtcgacgagtatcaggacaccaacacggctcagtatatg
tggttgcgcctgctcgcccagcgcccgaaaggcacaccgcagaacgtctgctgcgtgggc
gacgacgaccagtcgatctatggctggcgtggtgcggaggtggacaacatcctgcgcttc
gagaaggattttcccggcgccaaggtcatcaagctggagcgcaactaccgctccaccgcc
catatcctgggtgcggctggccacctgatcgcccataacgaggaccggcttggcaagacc
ctgttcaccgacaggcacgaccccgacgacgacaaggtcgtggttcacgcggcctgggat
tcggaggaagaggcccgcgccgtcggcgaggaaatcgagcagctccagcgcaagcagcac
aagctcaacgacatggccatcctcgtgcgtgcgtccttccagatgcgcgaattcgaagac
cgtttcgtcacgctcggcctcaactaccgcgtcatcggcggcccgcgcttctacgagcgg
ctcgaaatccgcgatgcgctcgcctatttccgcctcgtcagccagccgtccgacgacctc
gccttcgagcgcatcgtcaacacgcccaagcgcggcctcggcgacacgacgatccgaaac
ctgcacgactatgcccgcgcccgcgacatccccatgctcgccgccgccgccgatatcatc
gagaccgacgagctgaaaccgaaggctcgcaaggcgctgttcgatgtcgtcaccgatttc
cgccgctggcaatcgctgctggagacgatgccgcacaccgagcttgccgagcagatcctc
gacgagagcggctataccgcgatgtggcaggccgacaagtcggcggaaggacccggacgc
ctcgacaacctcaaggaactcatccgctcgatggaagcgttcgagtccatgcgcggcttc
ctggatcacgtctcgctggtcatggatgccgagcagaatgccgacctcgacgccgtctcg
atcatgaccctgcactcggccaagggcctcgagttcgagaccgtcttcctgcccggctgg
gaggaaggcctcttcccccaccagcgctcgctcgacgagggcggccgctcggggctggag
gaggaacgccgcctcgcctatgtcggcatcacgcgcgccaagcgccgctgccacatctgg
ttcgtttccaaccggcgcatccacggcctgtggcaatcgacgctgccgtcccgctttctg
gacgagctgccggaaacacatgtcgaagtagcggaggtcgagcagtcctatggcggctat
ggtcgcgggggcggttatggccaatcccgcttcgacaagcaggagccgttccagaacgcc
tattcgacgcccggctggcggcgcgcgcaggcaaaccgcaccgacgcgacgcgcgacaac
tggggctcgcgctcgggccatgcggtggaacgcgtcggctatggtgaaagcggtccgcgc
ggccgcacgatcgaaggagagctcatcgccaagtcagcgacaagcgaaccctcgaaattc
gccatcggcgaccgcgtgttccacctcaaattcggcaacggcaatgtcgcgtcgatcgaa
ggcaacaagctgaccatcgatttcgaccgcgccggccagaaacgcgtgctggacggtttc
gtccagaaggcctga
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