Shinella sumterensis: Q9314_18350
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Entry
Q9314_18350 CDS
T09417
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
ssum
Shinella sumterensis
Pathway
ssum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q9314_18350 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssum03400
]
Q9314_18350 (uvrB)
DNA repair and recombination proteins [BR:
ssum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q9314_18350 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Q9314_18350 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
AAA_16
Kinesin
UB2H
SWI2_SNF2
Microtub_bd
DUF87
Motif
Other DBs
NCBI-ProteinID:
WLS08111
LinkDB
All DBs
Position
complement(3701796..3704924)
Genome browser
AA seq
1042 aa
AA seq
DB search
MARTPKKSPPSNPGFEEAPQSPFEGEPLSGSVSDWVKQLEAEAEAGSVESRREVASKAGK
HRKSVENAARRHTENVTASKTSRGVSIGGSSDPRTRAAAGLNPVSGMDVSLEDAASLNAG
TAVTATVEALSALIESGNPLFKDGKLWTPHRPARPAKSEGGIPIRMISEYQPAGDQPTAI
RDLVEGLSSGERSQVLLGVTGSGKTFTMAKVIEETQRPAVILAPNKTLAAQLYSEFKNFF
PENAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVAS
VSCIYGIGSVETYTAMTFQMEVGERLDQRQLLADLVAQQYKRREMDFQRGSFRVRGDTIE
IFPAHLEDAAWRISMFGDEIDAITEFDPLTGQKTGDLKSVKIYANSHYVTPRPTLNGAIK
AIREELKLRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIENYSRYLTGRKPGEP
PPTLFEYIPDNALIFIDESHVTIPQIGGMYRGDFRRKATLAEYGFRLPSCMDNRPLRFEE
WDAMRPDTIAVSATPGAWEMEQSGGVFAEQVIRPTGLIDPPVEVRPAKSQVDDVLGEIRE
TTQAGYRTLVTVLTKRMAEDLTEYLHEQGIRVRYMHSDIDTLERIEIIRDLRLGAFDVLV
GINLLREGLDIPECGFVAILDADKEGFLRSETSLVQTIGRAARNVDGKVILYADQITGSM
QRAMDETTRRREKQVAYNEAHGITPESVKARISDILDSVYERDHVRADISGVAGKGFADG
GNLVGNNLQAHLNALEKAMRDAAADLDFEKAARLRDEIKRLKAAELAVMDDPMARQEARS
AEGATGSIKNPAKSAEGATGNAKGSAKAQDGGKSGKAGAAASGTPSGNSRPTSPPSSSGL
ARGSTAADADTSKSLFQKPSLDDMGPGTDIERPLFRKPKLDEMGRDVATPAGKSLFRKNS
LDEMTVGRTEKPVTGDLPQRPPETLSTKKRHSPLLEGQPERTTGADDAKPVRRGKIGVGS
YEDPAEAKRKGRTKGKTGRPGR
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggccagaaccccgaaaaaatccccgccctcgaaccccggtttcgaggaagccccgcag
tcgcctttcgagggcgaacccctgtccggcagcgtctccgactgggtgaagcagctcgag
gcggaagccgaggcgggaagcgtcgaaagccgccgcgaggtggcgtcgaaggccggcaag
caccgcaagtcggtggagaacgccgcccgccgccacacggaaaacgtcaccgccagcaag
acctcccgcggcgtctcgatcggcggctcgtccgatcccaggacgcgcgccgccgccggc
ctcaacccggtgtcgggcatggatgtctcgctggaggacgccgcatcgctcaatgccggc
acggcggtcacggccacggtggaggcgctgtcggcgctcatcgagagcggcaacccgctg
ttcaaggacggcaagctgtggacgccgcaccgcccggcccggccggcgaagtcggaaggc
ggcatcccgatccgcatgatcagcgaataccagccggccggcgaccagccgacggcgatc
cgcgacctcgtggagggcctgtcttcgggcgagcgcagccaggtgctgctcggcgtcacc
ggctcgggcaagaccttcaccatggccaaggtgatcgaggagacgcagcgtcccgccgtc
atcctcgcgcccaacaagacgctcgccgcccagctctacagcgaattcaagaacttcttc
ccggaaaacgccgtcgagtacttcgtctcctactacgattattaccagccggaagcctat
gtgccgcgctccgacaccttcatcgagaaggaatcatcgatcaacgagcagatcgaccgc
atgcgccactccgcgacgcgctcgctcttggagcgcgacgactgcatcatcgtcgcctcg
gtctcctgcatctacggtatcggctcggtcgagacctacaccgccatgaccttccagatg
gaagtgggcgaacggctcgaccagcgccagctgctcgccgacctcgtcgcccagcaatac
aagcgccgcgagatggatttccagcgcggcagttttcgcgtgcgcggcgatacgatcgag
atcttcccggcccaccttgaagatgccgcctggcgcatctcgatgttcggcgacgagatc
gacgccatcaccgaattcgacccgctgaccggccagaagaccggcgacctgaaatcggta
aaaatctacgccaacagccactatgtcacgccgcgccccacgctgaacggcgccatcaag
gcgatccgcgaggagctgaagctgcgcctcgccgagctggaaaaggccggccgcctgctg
gaagcgcagcgcctggagcagcgcacgcgctacgatatcgagatgctggaggccaccggc
tcctgtgccggcatcgagaactattcgcgctatctcacgggccgcaaacccggcgagccg
ccgccgaccctgttcgagtacattcccgacaacgcgctgatcttcatcgatgagagccac
gtcacgatcccgcagatcggcggcatgtatcgcggcgacttccgccgcaaggcgacgctg
gccgaatacggcttccgcctgccctcctgcatggacaaccgcccgctgcgcttcgaggaa
tgggatgccatgcggccggacacgatcgccgtctcggccacgcccggcgcctgggagatg
gagcagtccggcggcgtcttcgccgagcaggtcatccgcccgaccggcctgatcgacccg
cccgtcgaggtgcgcccggccaaaagccaggtggacgacgtgctgggcgagatccgcgag
accacgcaggccggctaccgcacgctcgtcaccgtgctcaccaagcgcatggccgaagac
ctcaccgaatacctgcacgaacaggggattcgcgtgcgctatatgcacagcgatatcgac
acgctggagcgcatcgagatcatccgcgacctgcgcctcggcgccttcgacgtgctcgtc
ggcatcaacctgctgcgcgaaggcctcgacattcccgaatgcggcttcgtcgccattctc
gatgccgacaaggaaggttttctgcgctcggaaacgtccctcgtgcagaccatcggccgc
gcggcgcgaaacgtcgacggcaaggtcatcctctatgccgaccagatcaccggctccatg
cagcgcgcgatggacgagacgacccgccgccgcgaaaagcaggtcgcctataacgaggcg
cacggcatcaccccggaatccgtgaaggccagaatttccgacatcctcgacagcgtctac
gaacgcgatcacgtccgcgccgatatctccggcgtcgccggcaagggctttgccgacggc
ggcaacctcgtcggcaacaacctccaggcccacctcaacgcgctggaaaaagccatgcgc
gacgccgccgccgatctagacttcgaaaaggccgcccgcctgcgcgacgagatcaagcgc
ctcaaggccgccgaactcgccgtcatggacgacccgatggcgcggcaagaggcgagaagc
gccgaaggcgcgacagggagcataaagaacccggcgaagagcgccgaaggcgcgaccggg
aatgcaaaaggctcggcgaaagctcaggacggtggcaagagcggaaaagccggcgccgcc
gcctccggcacaccatcgggaaattcgcgcccaacctctcctccgtcatcctcgggcttg
gccagaggatccacagcggcggacgccgacacctccaaatccctcttccagaaaccctcg
ctcgacgacatgggcccgggcaccgacatcgaacgccccctcttccgcaagccgaagctg
gacgagatgggccgcgacgtcgccacgcccgccggcaagtcgctgttccgcaagaacagc
ctcgacgaaatgaccgtcggccggaccgaaaaacccgtcaccggcgacctgccccaacgc
ccgccggaaaccctctccaccaagaagcgccattcccccctgctggaaggccaacccgaa
cgcaccaccggcgccgacgacgcgaagccggtccgtcgggggaagatcggcgtcgggagc
tatgaggatccggcggaggcgaagcgcaaggggcggacaaaggggaagacggggcggccg
gggcgttga
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integrated database retrieval system
