Serratia surfactantfaciens: ATE40_010480
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Entry
ATE40_010480 CDS
T06779
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ssur
Serratia surfactantfaciens
Brite
KEGG Orthology (KO) [BR:
ssur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssur03016
]
ATE40_010480
Enzymes [BR:
ssur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
ATE40_010480
Transfer RNA biogenesis [BR:
ssur03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ATE40_010480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AOE99652
LinkDB
All DBs
Position
complement(2223626..2224747)
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AA seq
373 aa
AA seq
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MNYQLITTDAGLQQVCEQARKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPI
KQWQPFVELLADTAVVKFLHAGSEDLEVFLNAFKTLPTAMVDTQILAAFTGRPLSCGFAT
LVAEYMKVELDKSESRTDWLARPLTERQCVYAAADVFYLLPMAKQLVQETEEAGWTAAAN
NECLLLCQRRSETLAPELAYREISNAWQLRPRQLGCLQKLAEWRLRQARERDLAVNFVVR
EENLWQVARYMPSSLGELDSLGLSGPEIRYHGKTLLALVAEAEALDEGELPAPLANLIDQ
PGYKKVFKDIKAAIATVSEQSGLSSELLASRRQINQLLNWHWKLKDGESRPELISGWRGD
LLMAPLQEILKEY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagttgatcactaccgatgccggattgcagcaggtctgcgagcaggcgaga
aagcatgcccagatagcgctggacaccgagtttgtcagaacgcgcacctactatccgcag
ctgggcctgatccagctctacgacggtgaacaactctcccttatcgatcctttgccgatc
aagcagtggcagccgtttgtcgagctgttggccgataccgccgtggtgaaattcctgcat
gccggcagcgaagatctcgaagtgtttctcaacgcctttaaaacgctgccgacggcgatg
gtcgatacccagatcctggcggcctttaccggtcggccgctctcctgcggtttcgcgacg
ctggtggcggagtacatgaaggttgagctggacaaaagcgagtcgcgcaccgactggctg
gcgcgcccgctgaccgaaagacagtgcgtatacgcggcggccgacgtgttctatctgctg
ccgatggccaaacagctggtgcaggagaccgaagaggccggttggaccgcggcggccaat
aacgagtgcctgctgttgtgccaacgccgcagcgagacgctggcgccggaattggcctat
cgtgaaatcagcaatgcctggcagctgcgtccgcgccagctgggttgtctgcagaagctg
gcggagtggcggttgcgccaggcgcgcgagcgcgatttggcggtgaacttcgtggtgcgg
gaggaaaacctgtggcaggtggcgcgctatatgccttcttcgctgggagaactggattcg
ctgggtctgagcgggccggagatccgttatcacggtaaaacgctgctggcgctggtggcc
gaggccgaagccttggacgaaggcgagctgccggcgccgttggccaaccttatcgatcag
ccgggctacaagaaggtgtttaaagacatcaaggcggcgatcgccaccgtcagcgagcaa
agcgggttgagcagcgagctgctggcgtcccgtcgccaaattaaccaactgctgaactgg
cattggaaactgaaggacggcgagagtcgccctgaattaatcagcggctggcgtggcgat
ttattaatggcgccgttgcaggagatcctgaaagaatattaa
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