Serratia surfactantfaciens: ATE40_016140
Help
Entry
ATE40_016140 CDS
T06779
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ssur
Serratia surfactantfaciens
Pathway
ssur03030
DNA replication
ssur03430
Mismatch repair
ssur03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATE40_016140
03430 Mismatch repair
ATE40_016140
03440 Homologous recombination
ATE40_016140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssur03032
]
ATE40_016140
03400 DNA repair and recombination proteins [BR:
ssur03400
]
ATE40_016140
Enzymes [BR:
ssur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ATE40_016140
DNA replication proteins [BR:
ssur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ATE40_016140
DNA repair and recombination proteins [BR:
ssur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ATE40_016140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AOF00708
LinkDB
All DBs
Position
complement(3418471..3421959)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKTAPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEELGDELAQLTVLASNNEGYQNLTLLISRAYQRGYGAAGPTIDRDW
LIEHREGLILLSGARQGDVGKFLLRGNQAQVDQCLDFYQQHFPDCYYLELIRTGRPDEEN
YLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVLKSKEGL
EERLEFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGHHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKTGLEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILEKLIMSGAFDRLGPHRAAL
MNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYANIAPWPEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVVAARVMVTKRGNRIGICT
LDDRSGRLEVMLFTEALEKYQHLLEKDRILIASGQVSFDDFSGGLKMMAREVMDISEARE
KYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARAKLRFGATWRVTP
TDRLLIDLRTLVGNEQVDLEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcacctgcgcgtccacagcgactactccatgattgatgga
ttggccaagacggcgccgctggtgaaaagagctgccgcgttagccatgcctgctctggca
atcaccgatttcaccaacctgtgcgggctggtgaaattttacggcagcgcgcacggcgcc
gggatcaaaccgatcatcggtgcggatttccatgtgcaaagcgaagagctgggcgatgaa
ctggctcagttgacggtgctggccagcaacaatgaaggctaccagaacctgacgctgctg
atttcccgcgcctatcagcgtggctatggcgccgccggcccgaccatcgatcgcgactgg
ctgatcgaacaccgcgaagggctgatcctgctctccggtgcgcgccagggcgacgtcggc
aagtttctgctgcgcggcaaccaggcgcaggtggatcagtgcctggacttctaccagcag
cacttccctgactgttactacctggaactgatccgtaccggccgcccggacgaagagaac
tacctgcatgcggcggtggcgctggccaccgagcgcggtttgccggtggtggccaccaac
gacgtgcgcttcctggtggaagatgacttcgacgcccatgagattcgcgtcgccatccac
gacggcttcacgctggacgatcccaagcggccgcgcaactacagcccgcagcaatacatg
cgcagcgaagacgagatgtgcgaactgttcgccgacatcccggaagcgctgctgaacagc
gtcgaaatcgccaagcgctgcaacgtcaccattcgccttggcgaatacttcctgccgcag
ttcccgaccggcgatatgagcaccgaggacttcctggtgctcaaatcgaaagaggggctg
gaagagcgtctggagttcctgttccccgatcctgaagtgcgcgcgcagcgccgcccggaa
tacgacgagcgtctggacgtcgagctgaaggtgatcaaccagatggggttccccggctac
ttcctgatcgtgatggagtttatccagtggtcgaaggacaacaatgtgccggttggcccg
gggcgcggctccggcgccggttcgctggtggcctatgcgttgaaaatcaccgacctcgat
ccgttggagttcgacctgctgtttgaacgctttctgaacccggaacgtgtttcgatgccc
gacttcgacgtcgacttctgcatggagaagcgcgatcaggtgatagagcacgtggcggag
atgtacggccgcgaagcggtatcgcagatcatcaccttcggtaccatggcggcgaaagcg
gttatccgcgacgtgggccgggtgctggggcacccgtacggtttcgtcgatcgcatctcc
aagctggtgccgccggatccgggcatgacgctggaaaaagccttcgccgccgaaccgcag
ctgcctgaaatttacgaggccgacgaagaggtcaaggcgctgatcgacatggcgcgcaag
ctggaaggggtaacgcgcaacgctggtaaacacgccggtggcgtggtgatcgcgccgacc
aagatcaccgacttcgcgccgctgtactgcgacgccgaagggcaccacccggtgacccag
ttcgacaagaacgacgtggaatacgctgggctggtgaagttcgacttcctcggtctgcgt
accctgaccatcatcgactgggcgctggagatgatcaacgcccggcgcgccaagaccggg
ctggaaccgatcgacatcgccgccattccgctcgacgacaagaaaagcttcgacatgctg
cagcgctcggaaaccacggcggtgttccagcttgaatcgcgcggcatgaaagacctgatc
aaacgtctgaagcccgactgcttcgaagacatgatcgcactggtagcgctgttccgcccg
gggccgctgcagtcgggcatggtagataacttcatcgaccgcaagcacggccgcgaagag
atctcctacccggatatccagtggcagcacgagtcgctcaagccggtactggaaccgacc
tacggcatcatcctgtatcaggagcaggtgatgcagattgcccaggtgctggcgggctat
accttgggcggcgcagacatgctgcgtcgtgcgatgggtaaaaagaacccggtcgaaatg
gccaagcagcgcggcggctttgaagacggcgcgaaatcgcgcggcatcgacggcgaactg
tcggtgaaaatcttcgatctggtggagaaattcgccggttacggctttaacaaatcgcac
tccgccgcctatgcgctggtctcttaccagacgctgtggctgaaggcgcactacccagcc
gagtttatggcggcggtaatgaccgccgatatggacaacaccgacaaagtggtggggctg
gtggacgaatgttggcgtatggggctgaagatcctgccgccggacatcaacagcggcctt
tatcacttccacgttaacgacgacggcgagatcgtttacggcatcggcgccatcaagggc
gtgggggaagggccgatcgaggcgattatcgaggcgcgcaacagcggtgagcaaggttac
ttcaaagacctgttcgacctgtgcgcgcgctccgacatcaagaaactgaaccgccgcatt
ctggaaaaactgatcatgtccggggcgttcgatcgccttgggccgcaccgcgccgcgctg
atgaattcgcttggcgatgcgttgaaagcggcggatcagcatgcgaaagccgaagctatc
ggccaggtggatatgtttggcgtgctggcggaagcgccggagcaggtggagcaatcctac
gccaatatcgcgccctggccggagcaggtggtgctggacggtgaacgggagacgctgggg
ctgtacctcaccggccacccgatcacccagtacctgaaggagatcgaacgttacgccggt
ggccagcgtttgaaagacatgcacccgacggaccggggcaaaatgactaccgccgtcggg
ctggtggtcgccgcgcgggtgatggtgaccaagcgcggcaaccgcatcggcatctgtacg
ctggatgaccgttcgggccgtctggaagtgatgctattcaccgaagcgttagaaaaatac
cagcatttgttggaaaaagaccgtatccttatcgccagtggacaggtcagctttgatgac
tttagcggcgggcttaaaatgatggcccgcgaggtaatggacatcagtgaagcccgggaa
aaatatgctcgcgggcttgctatctcgctgactgacaggcaaattgatgaccagcttttg
aaccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctctac
tatcaacgggaagatgcgcgagccaagctgcgttttggcgcaacctggcgcgtgacgccc
accgaccgcttgttgatagacttgcggacgttggtaggcaatgagcaggtggacttggaa
tttgactaa
DBGET
integrated database retrieval system
