Serratia surfactantfaciens: ATE40_020620
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Entry
ATE40_020620 CDS
T06779
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ssur
Serratia surfactantfaciens
Pathway
ssur03030
DNA replication
ssur03410
Base excision repair
ssur03420
Nucleotide excision repair
ssur03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATE40_020620
03410 Base excision repair
ATE40_020620
03420 Nucleotide excision repair
ATE40_020620
03440 Homologous recombination
ATE40_020620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssur03032
]
ATE40_020620
03400 DNA repair and recombination proteins [BR:
ssur03400
]
ATE40_020620
Enzymes [BR:
ssur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ATE40_020620
DNA replication proteins [BR:
ssur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ATE40_020620
DNA repair and recombination proteins [BR:
ssur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
ATE40_020620
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATE40_020620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
HHH_5
Ribosomal_60s
Motif
Other DBs
NCBI-ProteinID:
AOF01536
LinkDB
All DBs
Position
complement(4403864..4406662)
Genome browser
AA seq
932 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHNMVKAMGLPLLVTPGVEADDVIGT
LALEAEKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGIGGLDALYGNLESIATLSFRGAKTMAAKLEQNK
EVAYLSYKLATIKTDVELDLTCAELTVSEPDVDTLQQLFKQYEFKRWLADVEAGVWLENK
KGAGAKAAGVAKAAVAAEAPKALAEAKLSQDGYVTILDEATFTDWLTRLKKAEVFAFDTE
TDGLDTLTANLIGLSFAIAPGEAAYLPVAHDYLDAPPQLDRAYVLEALKPLLEDEKALKV
GQNLKFDMSLLARYGIEMRGIAYDTMLESYVLDSVGGRHDMDSLADRYLGHKTITFEEIA
GKGKNQLTFNQIALEQAAPYAAEDADVTLQLHLAMWPQLKQSAELLTVFNEIEMPLLPVL
SHIERTGVLIDPAILSAHSQELAKRLAELEVQAHELAEEPFNLASTKQLQAILYEKQKLP
VLKKTPGGAPSTNEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHT
SYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHL
SQDEGLLKAFAEGKDIHRATASEVFGVPLDKVTSEQRRSAKAINFGLIYGMSAFGLARQL
GIPRGEAQRYMDLYFERYPGVLDYMERTRQQASEQGYVSTLDGRRLYLPDVRSSNGMRRK
AAERAAINAPMQGTAADIIKRAMIEVDAWLQGEEKPLVRAIMQVHDELVFEVHESVIDEA
SQRIRQLMEGSMTLAVPLKVDVGVGMNWDEAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattgcagaaaacccactaatcctggttgacggttcctcctacctctaccgc
gcttaccatgccttcccgccgctgaccaactcggcgggtgagccgaccggcgcgatgtac
ggcgtgctgaatatgctgcgcagcctgctgctgcagtatcaaccgagccacgttgccgtg
gtgtttgatgccaaagggaagaccttccgcgacgagctgttcgctgaatacaagtcgcac
cggccgccgatgccggacgatctgcgtgcgcagatcgagccgctgcacaacatggtcaag
gcgatgggcctgccgctgctggtgacgcccggcgttgaggcggacgacgttatcggtacg
ctggcgctggaggccgagaaggccggccatgcggtgctgatcagcaccggcgacaaagac
atggcgcagctggtgacgccgaacgttaccctgatcaacaccatgaacaacacgatcctc
ggcccgcaggaagtgtgcgacaagtacggtattccgccggaactgatcatcgacttcctg
gcgctgatgggcgattcatcggacaacattcccggcgtgccgggcgtgggcgagaaaacc
gcccaggcgttgctgcagggcatcggcgggctggatgcgctgtacggcaatctggagagc
atcgccacgctgagcttccgcggcgccaaaaccatggcggccaagttggagcagaacaaa
gaggtcgcgtacctctcctataagctggcgacgatcaaaaccgacgtcgagctggatctg
acctgcgctgagctgacggtgtccgagccggatgtcgatacgctgcaacagctgttcaaa
cagtacgagttcaaacgctggctggcggacgtggaagccggcgtatggctggaaaacaag
aaaggcgcgggcgcgaaagctgccggcgtcgccaaagcggccgtcgccgcggaagcgccg
aaagcgctggcggaggccaagctttctcaggacggttatgtcactatcctggatgaagcg
acctttaccgactggctgacgcggctgaaaaaggccgaggtatttgccttcgatactgaa
accgacgggctggataccctgaccgccaacctgatcggcctgtccttcgcgatcgcaccg
ggcgaagcggcttacttgccggtggcgcacgattatctggatgcgccgcctcagctggat
cgcgcctacgtgctggaagcgcttaagccgctgctggaagacgagaaggcgctgaaagtc
gggcaaaacctgaagttcgacatgagcctgctggcgcgctacggcatcgagatgcgcggc
attgcctatgacaccatgctggagtcctatgtgctggacagcgtcggcggccgccatgat
atggacagcctggccgaccgttatcttggccataaaaccatcaccttcgaagaaatcgcc
ggcaagggcaaaaaccagctgacgttcaaccagatcgcgctggagcaggcggcaccttac
gccgccgaagacgccgatgtcacgctgcagctgcacctggcgatgtggccgcagctgaag
caaagcgcggaactgctgacggtattcaatgagattgaaatgccgctgttgccggtactg
tcgcatatcgaacgcaccggggtgctgatcgatccggccattttgtcggcccactcccag
gagctggccaagcgtctggctgagctggaagtgcaggcccatgagctggcggaagagccg
ttcaacctggcgtcgaccaagcagctgcaggcgatcctgtacgaaaaacaaaagctgccg
gtgctgaagaaaaccccgggcggggcgccttctaccaacgaagaagtactggccgaactg
gcgctggactacccgctgccgaaggtgattctggaataccgcggcttggcgaagctgaaa
accacctacactgacaagctgccgctgatgatcaatccggtcagcggccgggtgcatacc
tcataccatcaggcggtgactgccaccggtcgtctctcctcgagcgatccgaacctgcag
aacatcccggtgcgcaacgaagaagggcggcgtattcgccaggcctttatcgcgccggaa
ggctaccgcatcgtcgccgccgactactcgcagatcgagttgcgcatcatggcgcatctg
tcacaggatgaagggctgctgaaggccttcgccgaagggaaagacatccaccgtgccacg
gcgtcggaagtgttcggcgtgccgttggataaagtgaccagcgagcagcgccgcagcgcc
aaagcgattaacttcggcctgatttacggcatgagcgccttcggcctggcacgccagttg
gggatcccgcgtggggaagcccaacgctatatggatctctacttcgagcgttacccgggc
gtgctggactatatggagcgcactcgccagcaggcctccgaacagggctacgtcagcacg
ctggacgggcgccgcctgtacctgccggacgtacgctccagcaacggcatgcgccgcaag
gcggccgaacgcgccgccatcaacgccccgatgcagggcaccgcggccgatatcatcaag
cgtgcgatgatcgaggtcgacgcctggctgcaaggggaggagaagccgttggtgcgcgcg
attatgcaggtgcacgatgaattggtgtttgaggtgcatgagtcggtgatcgacgaagcc
agccaacgcatccgccaactgatggaaggcagcatgacgctggcggtgccgctgaaggtt
gatgtgggcgtcggcatgaactgggatgaagcgcactga
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