Serratia surfactantfaciens: ATE40_021700
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Entry
ATE40_021700 CDS
T06779
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssur
Serratia surfactantfaciens
Pathway
ssur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE40_021700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssur03019
]
ATE40_021700
03400 DNA repair and recombination proteins [BR:
ssur03400
]
ATE40_021700
Enzymes [BR:
ssur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATE40_021700
Messenger RNA biogenesis [BR:
ssur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATE40_021700
DNA repair and recombination proteins [BR:
ssur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ATE40_021700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
DUF6972
Motif
Other DBs
NCBI-ProteinID:
AOF01730
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All DBs
Position
4648116..4649948
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AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAEQVLRDTFGYQQFRPGQQTIINAAIGGQDCLVVMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLLAYGVSAACYNSTQTREEQLEVMAGCRNGTIKMLY
IAPERLMMESFLNLLDHCPPAMLAVDEAHCISQWGHDFRPEYRALGQLKQRFPSMPVIAL
TATADEATRGDIVRLLSLQDPLVQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNDRRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILLYDPADMAWLRRCLEEKPAGQQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGKHENCGNCDICLDPPKRYDGLEDARKAL
SCVYRVGQRFGLGYIVEVLRGSNNQRIREYGHDKLPVYGIGRDQTTEHWTSVLRQLIHLG
FITQNIAMHSALQLTEAARPVLRGEVVLQLAVPRIQSLKSRSSANQKSYGGNYDRKLFAK
LRKLRKSIADEENIPPYVVFNDATLLEMAEQMPIKAGDLLSVNGVGQRKLERFGAPFMAM
IRDHLDNDED
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgattaacagagagttgctggccgagcaggtattgcgcgatacc
ttcggttaccagcaattccgtccggggcagcaaacgattatcaatgccgcgatcggcggg
caggattgcctggtggtgatgccgaccggcggcggtaagtcgttgtgttaccaaatcccg
gcgctggtgatggacggcctgacgctggtcgtttctccgctgatttcgctgatgaaagac
caggtcgatcagctgttggcctacggcgtctccgccgcctgctacaactcgacgcaaacc
cgcgaagagcagctggaggtcatggccggttgccgcaacggcaccatcaagatgctgtac
atcgcgccggaacggctgatgatggaaagcttcctcaatctgctcgatcactgcccgccg
gcgatgctggcggtggatgaggcgcactgcatttcgcagtggggccatgacttccggccg
gaataccgtgcgctgggtcagctgaaacaacgcttcccgtcgatgccggtgatcgcgttg
accgccaccgctgacgaggccacgcgcggcgacatcgtgcgcctgctgtcgctgcaggat
ccgttggtgcaggtcagcagcttcgaccggccgaacatccgctacacgctggtggaaaaa
ttcaaaccgctcgatcagttgtggcgcttcgtgcaggatcagcgcggcaagagcggcatt
atctattgcaacagccgcgccaaggtggaagacaccgccgcgcgtctgcaaagccgcggg
ttgagcgtcggcgcctatcacgccgggctggacaacgatcgccgcgcgcaggtgcaagag
gcgttccagcgtgacgatctgcaggtggtggtggccactgtcgccttcggcatgggcatc
aacaaacccaacgtgcgcttcgtggtgcacttcgacatcccgcgcaatatcgaatcctat
tatcaggagaccggccgcgccgggcgcgacggcctgccggccgaagccatcctgctgtac
gatccggccgacatggcctggctgcgccgctgtctggaggagaaacccgccgggcagcaa
ttggacatcgaacgccacaagctgaacgccatgggcgcgttcgccgaggcgcaaacctgt
cgtcgtctggtgctgctcaactacttcggcgaaggcaaacacgagaactgcggcaactgc
gatatctgcctcgatccgcccaagcgctacgacgggctggaggacgcgcgtaaggcgctg
tcctgcgtgtatcgcgtcggccagcgcttcggtctggggtacatcgtggaagtgctgcgc
ggctccaacaaccaacgcattcgcgaatacggtcacgacaagctgccggtgtacggcatc
ggccgcgatcagaccaccgaacactggaccagcgtgctgcgtcagctgatccacctgggc
tttatcacccagaacatcgccatgcactcggcgctgcaattgaccgaggcggcgcgcccg
gtattgcgtggcgaggtggtgctgcagctggcggtgccgcgcattcagagcctgaagtcg
cgcagcagcgccaaccagaaatcctacggcggcaattacgatcgcaagctgttcgccaag
ttgcgcaaactgcgcaaatcgatcgccgacgaagaaaacattccgccttacgtggtgttc
aacgacgccacgctgctggaaatggccgaacaaatgccgatcaaggccggcgatctgttg
agcgtcaacggcgtcggccagcgcaaactggagcgtttcggcgcgccctttatggcgatg
atccgcgaccatctcgacaatgacgaagactga
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