Serratia surfactantfaciens: ATE40_022585
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Entry
ATE40_022585 CDS
T06779
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ssur
Serratia surfactantfaciens
Pathway
ssur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE40_022585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssur03019
]
ATE40_022585
03016 Transfer RNA biogenesis [BR:
ssur03016
]
ATE40_022585
Enzymes [BR:
ssur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ATE40_022585
Messenger RNA biogenesis [BR:
ssur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATE40_022585
Transfer RNA biogenesis [BR:
ssur03016
]
Prokaryotic type
tRNA degradation factors
ATE40_022585
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rho_RNA_bind
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AOF01891
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Position
4845086..4847560
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AA seq
824 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREYILAHLAKRETPASREELGNELGLSGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIH
GDVVLAQALGADRKGRREARIVRVLVPKNSQIVGRFFMDAGTGFVVPDDSRLSFDILIPA
DNVSGARMGFMVVVELTQRPTRRTKAVGKIVEILGDKMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLSEQVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPRTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGRLSTAKFYEAVMSSHARLTYNKVWHILQGDQELREHYHPLVKHLEELHAMYKVLDKA
RAERGGIAFETEEAKFIFNAERRIERVEPTVRNDAHKLIEECMIMANVAAARFVEKRNEP
ALYRVHDRPSDDHISALRSVLSELGLTLGGGNKPQPKDYAVLMDEVSERPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALASYGHFTSPIRRYPDLALHRAIKYQLAKEHSEPKERWTPT
GGWHSEFEEMLQLGEHCSMTERRADEATRNVADWLKCDFMQDHVGEVFSGIISSVTGFGF
FVRLNDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESSGTVYRLGDTVEIRVDAVHMDERK
IDFALVSSTRKARGEGKTERDRAKKGGQRTLRDNGSAGRGKRRGGKPPANFEPDSAFRKQ
DDAKPADNVKKAKKKAKKASDKTRKIAAATKAKRAAKKKGAEQA
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagaaaaatacgaatcccccatccccagc
cgtgaatatatcctggcccatttggcgaaacgagaaacgccggccagccgcgaagaactg
ggcaacgaactgggcctcagcggcgaagagcagctggaagcgctgcgccgccgcctgcgc
gccatggagcgcgatggccagttagtgtttacccgccgccagtgctacgcgctgccggaa
cgtttggatctgctgcgcggcacggtgatcggccaccgcgacggatacggcttcctgcgc
gttgagggcagcaaagacgatctgtacctgtccgccgaacagatgaaaatggcgatccac
ggcgacgtggtgctggcgcaggcgctgggcgcagaccgtaaagggcgtcgcgaggcgcgc
atcgtgcgcgtgctggtgccgaaaaacagtcagatcgtcggccgtttcttcatggacgcc
ggtaccggctttgtggtgccggacgacagccgtctgagctttgatattctgatcccggcg
gacaacgtcagcggcgcgcgcatgggctttatggtggtggtggagctgactcagcgtccg
acccgccgcaccaaggcggtcggcaagatcgtcgagatcctcggcgacaaaatgggcacc
agcatggcggtggacatcgcgctgcgcacccatgagatcccgcatacctggccgccgcag
gtggaaaaacaggtggccgatctcagcgagcaggtgccggaagcggccaagaagggccgc
gtcgatctgcgcaagctgccgttggtcaccatcgacggtgaagacgcgcgcgacttcgat
gatgctgtgtactgcgagaagaaacgcggcggcggctggcgcctgtgggtggcgatcgcc
gacgtcagctactacgtgcgtccgcgcaccgcgctggacgatgaagcgcgtagccgcggc
aactcggtctatttcccgtcgcaggtgatcccgatgctgccggaagtgctgtccaacggg
ctgtgctccctgaacccgcaggtcgatcgcctgtgcatggtgtgcgagatgaccatctcc
gcccaggggcgcctgtcgacggccaagttctacgaggcggtaatgagctctcacgcccgc
ctgacctacaacaaggtgtggcacattctgcagggcgatcaggagctgcgcgagcattac
cacccgctggtcaagcacctggaagagctgcacgccatgtacaaggtgctggataaggcg
cgcgccgagcgcggcggcatcgcgttcgaaaccgaagaagccaaattcatcttcaatgcc
gagcgtcgcatcgagcgcgtagagccgacggtgcgcaacgacgcccacaagctgatcgaa
gagtgcatgatcatggccaacgtggcggccgcgcgcttcgtcgagaaacgcaacgagccg
gcgctgtaccgcgtgcacgatcgtccgagcgacgaccacatctccgcgctgcgcagcgtg
ctgagcgagctggggctgacgctgggcggcggtaataagccgcagccgaaggactatgcg
gtgctgatggatgaagtgtccgagcgccctgaccacgaaatgctgcaaaccatgttgctg
cgctcgatgaagcaggcgatttacgatccggaaaaccgcggccacttcggcctggcgctg
gcctcttacggccacttcacctcgccgatccgccgttatccggatctggcgctgcaccgc
gcgatcaaatatcagctggccaaggaacacagcgagccgaaagagcgctggacgccgacc
ggcggctggcacagcgaattcgaagagatgctgcagctgggcgaacactgttcgatgacc
gagcgccgcgcggacgaagcgacgcgcaacgtcgccgactggctgaagtgcgacttcatg
caggatcacgtcggtgaagtgttcagcggcatcatctccagcgtgaccggtttcggcttc
ttcgtgcgcctgaacgatctgtttatcgacgggctggtgcacgtatcaacgctggataat
gattactatcgctacgataatatcggccagcgcctgatcggcgagtcttccggcacggtc
tatcgcctgggggatacggtggagatccgcgtggacgcggtgcatatggacgagcgcaag
atcgacttcgcgctggtgtccagcacccgcaaagcgcgcggtgaaggcaaaaccgagcgc
gatcgcgccaagaaaggcggccagcgtacgctgcgcgacaacggtagcgcagggcgcggc
aagcgccgcggcggcaaaccgccggccaacttcgagccggacagcgccttccgcaagcag
gatgacgcaaagcctgcggacaacgtgaagaaggcgaaaaagaaagccaagaaagcgtcc
gacaaaacgcggaaaatcgcggcggcgaccaaagccaaacgcgcagccaagaagaaaggt
gccgagcaggcctaa
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