Serratia surfactantfaciens: ATE40_022885
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Entry
ATE40_022885 CDS
T06779
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssur
Serratia surfactantfaciens
Pathway
ssur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATE40_022885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssur03019
]
ATE40_022885
03009 Ribosome biogenesis [BR:
ssur03009
]
ATE40_022885
Enzymes [BR:
ssur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATE40_022885
Messenger RNA biogenesis [BR:
ssur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATE40_022885
Ribosome biogenesis [BR:
ssur03009
]
Prokaryotic type
rRNA helicases
ATE40_022885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AOF01946
LinkDB
All DBs
Position
4903871..4905793
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AA seq
640 aa
AA seq
DB search
MTTEFETSFADLGLSAPIISALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLQADLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDLYRALLTKLQPEEELDME
TLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRRGDRGDRRDSRDGDRPRRERRD
VGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEIL
NHFTRTRILNKPMNMQLLGDAQPFERRERRDGGNGGERRGNGRPFNGERREGGPRRSFGE
RREGGNGGERRGGNYNRDGKPAPRRDDGAPAAPRRRFGDA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgagtttgaaacctcttttgctgatctggggctgtctgctccaatcatttcc
gccctgaacgatctgggctatgaaaaaccatctccgatccaggctgagtgtattcctcac
ctgttgaacggccgcgacgtgctgggcatggcacagaccggtagtggtaaaaccgcagcg
ttctcgctgccgctgctgcacaacctgcaggcagacctgaaagcacctcagatcctggtg
ctggcaccgacccgcgaactggcggttcaggttgctgaagcgatgaccgatttctccaaa
cacatgaacggcgtcaacgtggtagccctgtacggcggccagcgttacgacgtgcagctg
cgcgctctgcgccagggcccgcaaatcgttgtgggtaccccaggccgtctgctggaccac
ctgaaacgcggcaccctgaacctctctaacctgagcggcctggtgctggatgaagccgac
gaaatgctgcgcatgggctttatcgaagacgtagaaaccatcatggctgagatcccggct
gaacatcagaccgcgctgttctccgccaccatgccggaagcgatccgtcgcatcacccgc
cgcttcatgaaagagccgcaggaagtgcgcatccagtccagcgtgaccacccgtccggac
atcagccagagctactggtcggtctacggcatgcgtaaaaacgaagcgctggtgcgtttc
ctggaagccgaagactttgacgcggcgatcatcttcgttcgtaccaagaatgcgaccctg
gaagtggccgaagcgctggagcgcagcggttacagcagcgccgcgctgaacggcgacatg
aaccaggcgctgcgtgagcagactctggagcgtctgaaagacggtcgtctggatatcctg
atcgcgaccgacgttgcggcccgtggcctggacgttgagcgcatcagcctggttgtcaac
tacgacatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgcg
ggccgcgccggccgcgcgctgctgttcgtggaaaaccgcgaacgccgcctgctgcgcaac
atcgaacgcaccatgaagctgaccatccctgaagtagagctgccaaacgcagaactgctg
ggcgagcgtcgtctggccaagttcgccgcgaaagttcagcagcagctggaaagcagcgat
ctggacctgtaccgcgcactgctgaccaaactgcagccggaagaagagctggatatggaa
actctggccgcagcgctgctgaaaatggcacagggcgaacgtccgctgatcctgccgccg
gatccggtcttcaagccgcgtcagcgccgcgagttcaacgaccgtgacgatcgtcgcggt
gatcgtggcgaccgtcgtgacagccgtgatggcgatcgtccgcgtcgcgaacgtcgtgac
gttggcgagatgcagctgtaccgcatcgaagtgggccgtgacgatggcgttgaagttcgt
cacatcgttggcgccatcgctaacgaaggcgacatcagcagccgttacatcggtaacatc
aagctgttcgcttcccactccaccatcgagctgccaaaaggcatgccgggcgagatcctg
aatcacttcactcgcactcgcatcctgaacaagccgatgaacatgcagctgctgggcgat
gcacagccgttcgaacgtcgcgagcgtcgtgacggtggcaacggtggcgagcgtcgcggc
aacggtcgtccgttcaacggcgaacgtcgcgaaggcggcccgcgtcgctccttcggcgaa
cgtcgtgaaggcggtaacggcggcgagcgtcgtggcggtaactacaaccgtgacggcaag
ccggcgccacgccgtgatgacggcgcaccggcagcaccacgtcgtcgtttcggcgacgcg
taa
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