Streptococcus suis SC070731 (serotype 2): NJAUSS_1294
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Entry
NJAUSS_1294 CDS
T02536
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ssus
Streptococcus suis SC070731 (serotype 2)
Pathway
ssus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NJAUSS_1294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssus03019
]
NJAUSS_1294
03016 Transfer RNA biogenesis [BR:
ssus03016
]
NJAUSS_1294
Enzymes [BR:
ssus01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NJAUSS_1294
Messenger RNA biogenesis [BR:
ssus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NJAUSS_1294
Transfer RNA biogenesis [BR:
ssus03016
]
Prokaryotic type
tRNA degradation factors
NJAUSS_1294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1_RRP5
CSD
RNase_II_C_S1
FaeA
Motif
Other DBs
NCBI-ProteinID:
AGG64759
LinkDB
All DBs
Position
complement(1377898..1380267)
Genome browser
AA seq
789 aa
AA seq
DB search
MKNEIINYIKEVGPVTMDQLADQFGASSAKSFTDLVKLVSSMEGSRQLVFDNAGRITLPA
PKISKNKVTLQGIFRAHKSGFGFVTIDEEEDDLFVSRDDVNFAIEGDRVEIAIKKVADRL
KGTAAEAEVIDILEHSLKTAVGLIVFDEDKPEYAGYIKSKNQKIAQKIYIKKSPLVLTGT
EILKVDIEAYPNKKRDHFVATIRDVVGHKDDVGIDVLEVLESMDIVSEFPDEVLAEANRV
PESPSEQDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTE
GSALDKEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDRKGKVVKH
WIGQTVIKTTFRMTYSDVNDMIAGNQEKLATYKAIVPSVELMVKLHETLETMRYKRGALN
FDTTEAKIIVNKDGLPVDIQLRQRGIAERMIESFMLAANECVAEHFAKLDLPFIYRIHEE
PKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRSMQQAR
YSEHNHGHYGLGAEFYTHFTSPIRRYPDLLVHRMVRDYGHNPTEKAEHFEQVIPELAKSS
SSLERRAIEVEREVEAMKKAEFMQEFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHVTNL
NEYYQFHERTLTLQGEKSGRVFHVGQPIRIKLTRADKMTGEIDFAHMPSELDIVEKALKA
KRRTASHSNRDRDDRSGRGRGKHYKQEAAGRDSGRHKSGKDHKSKSGKKDKKKKPFYKEV
AKKNKKKRR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgaaattataaactatattaaagaagttggtcctgtgaccatggaccagctg
gcagatcagtttggagccagttctgctaagagctttacagacttggtcaagctggtttct
agcatggaaggcagtcgtcaacttgtctttgacaatgctgggcggattactcttcctgct
ccaaaaatctccaagaacaaggtgaccttacagggtatttttcgtgcccacaagtctggt
tttggctttgtgaccattgacgaggaggaagatgatctctttgtcagtcgtgacgatgtt
aactttgctatcgaaggtgacagagttgagattgcaattaaaaaggttgcagatcgtctc
aagggaactgccgcagaagcggaagtcattgatattttggaacatagcctgaaaactgcg
gtgggcttgattgtctttgacgaagacaagccagaatatgcaggctacatcaagtctaaa
aaccagaaaatcgctcagaagatttacatcaagaagtcacctttggtattgaccgggacg
gaaatcctcaaagttgacattgaagcctatccaaacaagaaacgggaccactttgttgcg
accattcgggacgtggtgggccataaggacgatgtgggaatcgatgtcttggaagtcttg
gagtccatggacatcgtgtcggagtttccagatgaagtcttggcggaggccaatcgggtg
ccagaaagtccgtcagaacaggactttgaagggcgtttggacctgcgggatgaaatcatc
tttaccatagacggtgcggatgccaaggacttggacgatgcggtccatatcaagcagctc
aagaacggcaatctggagttgggtgtccatatcgctgatgtcagctactatgtgacggaa
ggctctgccttggacaaggaggctgtcaagcgtgggacctctgtctatgtgaccgaccgt
gtggtaccaatgttgccagaacgcctgtcaaacggcatttgttccctcaatccaaatgtg
gatcgtctgacccagtcggctattatggaaattgaccgcaagggaaaggtggtcaagcac
tggattggccaaacagttattaaaacgaccttccgtatgacctattccgatgtcaatgac
atgattgctggaaatcaggaaaagcttgctacatacaaggctatcgtgccaagtgtagag
cttatggttaaactccatgaaacattggaaaccatgcggtacaaacgcggtgccctcaac
tttgacacgacagaagccaaaatcatcgtcaacaaggacggtctgccagtcgatatccag
ctacgtcagcggggcattgctgagcggatgattgagtccttcatgttggcagccaatgag
tgcgttgctgagcattttgccaagctggacctgccttttatctatcggatccacgaggag
cctaagtcagacaagttgcagaagttcatcgactatgcgaccagctttggtctgacggta
tatggtacggctagctctatcagccaggatgcccttcaagatcttatggagcgggtcaag
gatgaaccctatgcggacgtcctcaacatgatgttgctgcgttctatgcagcaggcacgc
tactcggagcacaaccacggccactacggactgggtgcggagttctacacccacttcacc
agtcctatccgccgctatcccgacctgctggttcaccggatggtgcgggactatggtcat
aatcctacggaaaaagcagagcattttgagcaggttattcctgagcttgccaagtcttcg
tccagtttagaacgccgtgccattgaggtagagcgggaagtcgaagccatgaagaaggca
gagttcatgcaagaatttgttgggcaagagtttgatggtgtcgtatctagcgtagtcaag
tttggtctctttgttgagttgccaaacaccgttgaaggactgatccatgttaccaacctc
aacgagtactaccagttccacgagcgaactctgaccttgcagggtgagaaatcaggtcgt
gtcttccatgtcggtcagccaatccgtatcaagctaacgcgggcggacaagatgacaggg
gaaatcgattttgcccacatgccgtccgaactggatattgtcgaaaaagctttgaaagcc
aagcggagaactgctagtcactccaaccgtgaccgtgatgatcggtcagggcgaggacgg
ggcaagcactacaaacaagaagctgctggtcgcgacagcggacgtcacaagtctggaaaa
gaccacaagtcaaaaagtggcaaaaaagacaagaaaaagaaaccattttacaaagaagtg
gctaaaaagaacaagaagaaaaggagatag
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